CI01000054_10222056_10229581


Basic Information

Item Value
gene id CI01000054_10222056_10229581
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10221946 ~ 10229581 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10222056_10229581.mRNA
ATGGATAATTTTCTGTTGCGCGGGGTTTTATGTATGATAGTTGTTTGTATGTTGAGCTTGTCAGCGCGTGGACGCAGTGATGTGCTCGAGCTCAGAGACGCAGACTTCGATTACCTCGCGCCCGAGCACGAGACCCTGCTGGTGAAGTTTTATGCACCATGGTGTGGTCATTGTAAGAAACTCGCCCCAGAGTTTGAAAGTGCAGCTACTCGACTGAAGGGAACAGTAACTTTAGCCAAGGTGGACTGTACTTCTAATACAAAAACCTGTAAGCACTATGGGGTCACTGGATACCCAACACTCAAAATATTTCGTAACGGACAGGAATCATCATCGTATGATGGGCCACGCTCAGCTGATGGAATCGTGAACTTTATGAAGAATCAGGCTGGGCCTGATTCTGTGCTTCTGCAAAGGTTCTTCTCAGGGACTGACAGCTCTCAACTTGCAGAGTTTCTTAAAGGAGCCAGTTTAATGAGGCAGAGTTTCCGCTTTGCCCACACCACAGACCTCCAGCTTGGAAACAAACATGGCGTCACATACGAGTCCGTGCTTCTGTTCCGACCCCCTCGACTGAGCAGTAAGTTTGAGGAGAGTGTGGTGCACCACAGAGGACCAATGTCCATCACAGGCCTGCGGCGCTTCATCAGAGACAACATTTTTGGACTTTGTCCTCACCTGACCAAAGAGAATAAGGATTCATTGAAAAAGAGGGATTTATTGACTGCCTACTATGACTTGGATTATCTTCACAATCCCAAAGGCTCCAACTATTGGAGAAACAGAGTGCTGAAGGTGGCGTCTAAGTTTAGTTCTCAGGGCCTGTTGTTTTCTGTGGCGAACCGTAATGACTTTGTGGAGGAGCTTGAAGATGAGTTCGGTCTGGGTGCGTCAGATGGAACTGAGCTGCCGTTTGTCACCATCAGGACACGGACAGGAAACAAATACACCATGCGGGAGGAGTTTACACGAGATGGCAAGTCTTTAGAGAGTTTTCTGGAAGACTATTTTGCTGGGCGACTAAAGCGCTATGTCAAATCAGAGCCTGTGCCTGCCAAAAACAACGGACCGGTCAAGGTTATATCACTTCAGGCATTAACTCAAGTTGATGTTTGTGGGAAGGTGGTTGTGGCAGATACGTTTCAACAGATTGTGAACGACCCAGAGAAAGACGTGCTTATTGAGTTTTATGCACCATGGTGTGGCCATTGTAAAAAACTGGAGCCCAAATATACAGAGCTTGGAGAACAGCTATACGGTGATCCCAATATAGTAATCGCCAAGATGGATGCAACTGCCAACGATGTCCCTCAGGGCTATGACGTACAAGGGCATGGAGCCCGTGAAGTGAAGGATTTCATCAGCTTCCTGAAGCGTGAGGCGTCCAAACCTCTTGTCCTAAACGGAGTCAAGGAAGAGCTGTAAACATTAAAGGGAAACTGCTGTTCATGAAGAGTGGAGAATTCTGTAGAATTCTGCTGCTGTTCAGCCATACATATCAAATCAAATTAATTAGCAGCAATCAATTAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10222056_10229581.mRNA True 1535 mRNA 0.47 12 10221946 10229581

Neighbor

gene id symbol gene type direction distance location
CI01000054_10162998_10168490 NA coding downstream 52897 10162967 ~ 10169049 (-)
CI01000054_10124266_10128452 NELFE.L, NELFE coding downstream 93494 10124054 ~ 10128452 (-)
CI01000054_10082299_10083956 NA coding downstream 137844 10081913 ~ 10084102 (-)
CI01000054_09914091_09916621 DDX39B coding downstream 305325 9913370 ~ 9916621 (-)
CI01000054_09864693_09866871 PPP1R11 coding downstream 354911 9863321 ~ 9867212 (-)
CI01000054_10230849_10243712 NA coding upstream 1268 10230849 ~ 10243838 (-)
CI01000054_10248885_10261371 INTS3 coding upstream 19020 10248601 ~ 10261371 (-)
CI01000054_10269355_10363708 NPR1B, NPR1, NPR1A coding upstream 39139 10268720 ~ 10364149 (-)
CI01000054_10389232_10412773 MYLIPA, MYLIP coding upstream 159651 10389232 ~ 10412773 (-)
CI01000054_10518872_10568706 JARID2B, JARID2 coding upstream 289291 10518872 ~ 10568706 (-)
G235678 NA non-coding downstream 7543 10206853 ~ 10214403 (-)
G235687 NA non-coding downstream 99247 10034760 ~ 10122699 (-)
G235828 NA non-coding downstream 183211 10034153 ~ 10038735 (-)
G235790 NA non-coding downstream 245738 9975780 ~ 9976208 (-)
G235772 NA non-coding downstream 275552 9946124 ~ 9946394 (-)
G235890 NA non-coding upstream 151132 10380713 ~ 10380930 (-)
G235895 NA non-coding upstream 184373 10413954 ~ 10414236 (-)
G235919 NA non-coding upstream 193809 10423390 ~ 10423600 (-)
G235924 NA non-coding upstream 200971 10430552 ~ 10430780 (-)
G236383 NA non-coding upstream 225247 10454828 ~ 10455116 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 736559 9483147 ~ 9484282 (-)
G235216 NA other downstream 973408 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 3050273 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 3567933 6628082 ~ 6642160 (-)
CI01000054_10817235_10819181 TAC1 other upstream 574290 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 641523 10871104 ~ 10881495 (-)
G236748 NA other upstream 1055613 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 1549309 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014092 si:dkey-27c15.3 coding NC_007130.7 CM002903.2 26681848 ~ 26730250 (+)