CI01000054_10248885_10261371 (INTS3)


Basic Information

Item Value
gene id CI01000054_10248885_10261371
gene name INTS3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10248601 ~ 10261371 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10248885_10261371.mRNA
TGCTACAGGGACCTGACATTAGTGAATCGGGACGGCATGAATGTGGTGCTCATAAAAATCAACCAGATCCTCATGGAGAAGTTCCTTAAGCTGCAGGACGTGTGCCGCACGCAGCTGGTGTGGTTGGTCAGAGAGCTGGTGAAGAGCGGAGTCATTGGAGCAGATGGTGTTCTCATGACGCTCATGAAACAGATCGCTGGGGGAGACATCTCCAACAAAAACCTGTGGTTGGCAGAGAATGTGTTGGAGATCTTAGTGGACCAGAGAGAGTGGGTGCTGAAGAGTGGGATGTTAGTGGCCATGTCTGTGTACACATACCTGAGGCTCATAGTGGACCATGGGACGCCAAACCTGCTGTCCCTCAGACAGAGAGAGGTGGACTTCTGCATCGGACTGCTCCGAGAGAGGTTCATGGAGTGTTTTATCATCGGGAGGGATCTGGTCAGACTCTTACAGAATGTGGCTCGTATTCCTGAGATGGAGTTGCTGTGGCGAGACCTGCTGCACAATCCTCAGACCCTTAGCCCACAGTTTACAGGTATATTGCAGCTCCTCACCTCTAGAACCTCACGAAAGTTTCTGGCCTGCCGACTCACCCCTGACATGGAGACTAAGCTGCTGTTCATGACTTCAAGGGTTCGGTTTGGGCAGCAGAAGCGCTATCAAGACTGGTTTCAGCGGCAGTATCTGTCCACAGCTGAGAGCCAATCACTGCGCTGTGACCTTATTCGTTATATATGTGGTGTGGTTCATCCATCCAATGAAGTGCTGAGCTCTGACATTTTGCCACGCTGGGCGATTATTGGCTGGCTTCTGACTACCTGCACGTCTAATGTTGCTGCATCCAATGCCAAACTGGCCTTGTTCTACGACTGGCTCTTCTTCAACCCAGAGAAAGACAGCATCATGAACATCGAGCCAGCCATTTTGGTGATGCATCACTCCATGAAGCCACATCCTGCTATTACAGCCACACTACTGGACTTCATGTGTCGGATCATCCCAAACTTTTTTCCTCCTCTTGAGGGTCAAGTGCGGCAGGGCGTCTTCAACTCTCTCAACTTCATCATGGAAAAGAGAGTTCTGGCTCACCTTGCACCTCTGTTTGACAACCCTAAACTGGACCGTGAGCTGCGGTCTATGCTGAGAGAACGCTTCCCAGAGTTCTGCAGTTCCCCGTCACCGCCCACAGAAGTTAAAATGGAAGAATCTGTTCCCTTGGAGATGGACAATCATGTGCTTGATAAGGAGGATGGTTGCTATGACAACACAGATGCTACCTTCAGTGATGATGAGGAAGAGTTGAACAACAAGGGTAAAAAACGAGAGTTCAAGTTCCAACAGCTCAAGGAAACCTACATTGACGAACCTGCTGACATCACACCTTTCGTGGACCAATTGGACGAGGCACTTAAAGAAAGGGTTCTGCAGCTGCAGAAAGGGAGTGACACAGAAACACACTGTGAGGTCATGCAGGAAATTGTGGATCTTATTTTAGAGGAGGATTTTGATTCAGAGCAGATGTCCACTCTAGCTTCCTGTCTGGCTGAACTGTTTAAGAGTCACTTTAGAGGAGATGTGTTGCCTGAGGAGATCACAGAAGAGTCGCTGGAGGAGTCCGTGTGTAAGCCGGTGTGTCTGATCTTCAGGAACTTGTGTCAGATGCAGGAAGACAACAGTGGTTTCTCTGTTCTGCTGGACCTGCTCGCCGAGCTCTACCAGAAACAGCCGAAAATCGGTTATCATCTGCTCTACTACCTCAAAGCCAGCAAAGCAGCAGCGGGGAAGATGAGTCTGTACGAATCATTTGCTCAGGCCACGGCACTGGGTGACCTGCACACCTGCTTGATGATGGACATGAAGGCCTGTCAGGAGGATGATGTGAGGCTACTGTGCTATCTAACCCCCTCCATCTATTCAGAGTTCCCAGATGAAACCCTGCGTAGTGGAGAGCTCCTCAACATGATCGTAGCTGTCATTGATTCAGCACAGCTTCAGGAGCTGATGTGTCATGTGATGATGGGTAATCTGGTCATGTTCCGTAAAGACTCAGTCCTCAACATCCTTATTCAGTCTCTGGACTGGGAGACATTTGAGCAGTACAGCACATGGCAGCTTTTCCTTGCTCATAGTATCCCTCTGGAGACCATCATCCCAATTTTACAGCACCTCAAATACAAGGAGCATCCTGAGGCTCTATCCTGCCTGCTGCTGCAGTTACGCAGAGAAAAGCCGAGTGAGGAGATGGTGAAGATGGTGCTGAGCCGACCCTATCACCAAGAGGATCAGTTCACCACCAGCATCCTGCGGCACTGGGCGGCTAAACACGACGACCTGCTGGGAGAACACATCAAAGCCCTGCTCATCAAGAACAACAACATGCCCCGTAAACGACAGAGGTCGGTACTGTGTTTAAAGCCCTGGGCTGAGGACACAAAGGTTACCGGTTCAAGCTCAAGTGGATTGACCACGTGGTCAGTATCACTGAAGAAACATGAAACACCCATATTACAGGCCCTGCAGCATGTTCAGGCCAGCTGCGATGAAGCCCACAAAATGAGGTTCAGTGATCTTTTCTCATTGGCTGAGGAATATGAGGATTCCTCCAAACAGCATAAATCCCGACGCAAAGCCCCGGCGACCTCACCACGGTCCCGCAAGGGTGCGGCTCCTCAACCCTCCAATGAAGAGGAGAGCGGATCCAGCAGCGCTTCGGAGGAAGAGGACTCCAAACCCAAAGCTCCCAAGAGGAAACGGAAAGGCTCATCTGCACCACTCAGGGGCAGCCTGCCCAAACACTCTCCTACTGTAGAGGCAGAACTCTTTCTCTGGACTCAAATGCAGAGGAGCCTGGGAGACAAGCCTCTACTATCTCTAACCACTGCACTGCTCGGCTATTTTAAGCCTGAGAGTTTGGTTAAGTGCAAGGATGGGCGCAGTGGGGGCGGCTAAGCCTGGAAAATCTAAATCCAGACTGGCTTAACGAAGAGGGTAATTAAATGTTCCTCAATGGCCCATCCATAAAAATTCATGGTAATGTACTTCAAAGAACGATTACCCACTAACGGTAGTGAACCCAGACTGTAACATGAAGTACAGGGATCTTAAACTGATTAAAGATTTTACTGCATTTGGAGGTTCGTTTTGGAATAGTGGAAAGCAGATAGGGGTCTTCAGGTTCAAGCCTTTTATCTTTTCATATTGAACAGACCTTTCCCATGCCCATCATTAATAAA

Function

symbol description
ints3 Predicted to be involved in DNA repair; mitotic G2/M transition checkpoint; and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Orthologous to human INTS3 (integrator complex subunit 3).

GO:

id name namespace
GO:0016180 snRNA processing biological_process

KEGG:

id description
K13140 INTS3; integrator complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10248885_10261371.mRNA True 3236 mRNA 0.50 27 10248601 10261371

Neighbor

gene id symbol gene type direction distance location
CI01000054_10230849_10243712 NA coding downstream 4763 10230849 ~ 10243838 (-)
CI01000054_10222056_10229581 NA coding downstream 19020 10221946 ~ 10229581 (-)
CI01000054_10162998_10168490 NA coding downstream 79552 10162967 ~ 10169049 (-)
CI01000054_10124266_10128452 NELFE.L, NELFE coding downstream 120149 10124054 ~ 10128452 (-)
CI01000054_10082299_10083956 NA coding downstream 164499 10081913 ~ 10084102 (-)
CI01000054_10269355_10363708 NPR1B, NPR1, NPR1A coding upstream 7349 10268720 ~ 10364149 (-)
CI01000054_10389232_10412773 MYLIPA, MYLIP coding upstream 127861 10389232 ~ 10412773 (-)
CI01000054_10518872_10568706 JARID2B, JARID2 coding upstream 257501 10518872 ~ 10568706 (-)
CI01000054_10645438_10672411 NA coding upstream 383771 10645142 ~ 10672681 (-)
CI01000054_10817235_10819181 TAC1 coding upstream 555771 10816015 ~ 10819362 (-)
G235678 NA non-coding downstream 34198 10206853 ~ 10214403 (-)
G235687 NA non-coding downstream 125902 10034760 ~ 10122699 (-)
G235828 NA non-coding downstream 209866 10034153 ~ 10038735 (-)
G235790 NA non-coding downstream 272393 9975780 ~ 9976208 (-)
G235772 NA non-coding downstream 302207 9946124 ~ 9946394 (-)
G235890 NA non-coding upstream 119342 10380713 ~ 10380930 (-)
G235895 NA non-coding upstream 152583 10413954 ~ 10414236 (-)
G235919 NA non-coding upstream 162019 10423390 ~ 10423600 (-)
G235924 NA non-coding upstream 169181 10430552 ~ 10430780 (-)
G236383 NA non-coding upstream 193457 10454828 ~ 10455116 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 381389 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 763214 9483147 ~ 9484282 (-)
G235216 NA other downstream 1000063 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 3076928 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 3594588 6628082 ~ 6642160 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 609733 10871104 ~ 10881495 (-)
G236748 NA other upstream 1023823 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 1517519 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014091 ints3 coding NC_007130.7 CM002903.2 26640096 ~ 26673855 (+)