CI01000054_10759809_10795763 (PARD6G, PARD6GB)


Basic Information

Item Value
gene id CI01000054_10759809_10795763
gene name PARD6G, PARD6GB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10759809 ~ 10795780 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10759809_10795763.mRNA
TATGGAGCAGAGTTCCGCAGGTTTTCAGTGGATCGACTAAAACCTGGCAAATTTGAAGAATTCTACAAACTCATCATGACAATCCACCGGATTGCAAACATGGAGGTGATGATTGGATACGCTGATGTTCACGGAGACCTCCTCCCCATCAATAACGACGAGAACTTCGGCAAGGCCGTGTCCACCGCACATCCCCTGCTGCGAATCTTTATCCAGAGACAAGCACACAGATACATGGTTCCAAACGTGGCCCTGTGTGCAGTTATTATGTTGTCACTAGCAAACACTAATGTGTGTGTGATGGAGCCGCTGTGGTCTGGAGATAACTTTCTACAGGAAAGGCTGCTGGTTTTGATGGCAGGGAAGAGAGTGACAGTTCCTTCCTGTGGAGAGACTCCAACTCTTCCTGTAAATCCCAATGCACCCTTAAAGACAAATCAGCATCCTGTAGCTGAACTGTTACAATGTGTGTTAGATACTTTGGCCAGTCCTTTCAACATAAGAGAATGGAGGAAGGAAGTGGCGTTCACCAGGATTCTGGAGGCTATAGTTGTTTATCGCCTGGAGCAGAAGTTTGTGGCCTCTGGATTCGGCCCAGTGCAGTGCGAGAGAAATGGAGATTGCAGCAGAAATCAGAGGTTGAAGAACTTTGTTGCCTCACCAGGACAATCCATTCCACTGAGTCATTACCACTGTGCCCTTTGCAAAGTTCTTAATCTCAGAACTCATGCTGGGAAGTCGGTTAAACTTGCACTGGAAACTATGCCTTTATACCCAAAGCGAACAGTCCAGTCATCATTTTTGTTTACTCTTGCAGAAGAGGTTGACTACAGCAACTTTGGCACCAGCACTCTGACCAGGAAAAAGAAGGCAGTGGTCACTCTTCGAAATGACCTGAACCGCAAACGGCCCCACATCCGCATTGGCATGCCTCAGGACTTCCGCCCCGTGTCGTCCATTATTGACGTGGACATCCTTCCTGAATCTCACCGAAGAGTTCGACTCTACCGGCATGGCTCGGACAAGCCCCTTGGATTTTACATCCGTGATGGCACCAGTGTCCGTGTTACACCCCACGGCTTGGAAAAGGTCCCGGGTATCTTCATTTCCCGCCTGGTACCTGGAGGCCTGGCCGAGAGCACGGGCCTGCTGGCCGTCAATGATGAGGTCCTGGAAGTCAATGGTATCGAGGTGACAGGAAAGACATTGGACCAGGTGACTGACATGATGATCGCAAACAGCCACAACCTTATTGTGACCGTGAAGCCGGTGAACCAGCGCAACAATGTGGTGCGCAGCAGTCGTATCTCAGGCAGCTCGGGTCAGTCATCCGACAGCAGTGGTTCGGTGGGATACCCCGCCATCACTGCTCCCACCGGTGCCACCGCCATTTCTCATGGCTACAGCCCAGAGGATCTGGAGAGCGATGAGGAGTCGGACATCGTAATTGAGAGCAACATCAAGCGGCCGTCACGACGCTCCAATGCCTCAGTGGCTTCAACTGCGTCCCGGTCCCAGATGCAAACAACTACCGTGACCCCACCCAGCCCCCCTACACGACCCCAAACGAGACCTCCATCCACGGTGTCCACGGCCTCTTTCCACTCTCAACCGAGCTTTAACGGCACAGTTCACAATAGTTTGAGTTACAAGTTGCACAAGGACCTTACCCTCCAGCACCCCCCTTACCACAGCAGCAACCCCGCTATGCGGGAAAGCAATGGCAGCCTACACAAAATCCTCAGTAGCCTGAGGACAGACCCCCGTCACAGCTTGGCTTTACCCAGAGGAGGGGTGGAGGAGGATGGCACAGTCATCACTTTATAACACATACAGTCAAGTAT

Function

symbol description
pard6gb Predicted to enable protein kinase C binding activity. Acts upstream of or within several processes, including animal organ development; apical protein localization; and tube morphogenesis. Located in several cellular components, including apical plasma membrane; cleavage furrow; and nucleus. Is expressed in several structures, including EVL; axis; central nervous system; immature eye; and pharyngeal arch. Orthologous to human PARD6G (par-6 family cell polarity regulator gamma).
pard6g Predicted to enable protein kinase C binding activity. Predicted to be involved in centrosome cycle; establishment or maintenance of cell polarity; and regulation of cellular localization. Predicted to be located in cytosol and plasma membrane. Predicted to be part of protein-containing complex. Predicted to be active in apical plasma membrane; cell cortex; and nucleus.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06093 PARD6; partitioning defective protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10759809_10795763.mRNA True 1844 mRNA 0.52 6 10759809 10795780

Neighbor

gene id symbol gene type direction distance location
CI01000054_10751348_10752449 NA coding upstream 7298 10751295 ~ 10752511 (+)
CI01000054_10601018_10615939 NA coding upstream 143855 10600974 ~ 10615954 (+)
CI01000054_10508500_10513655 NA coding upstream 245952 10508500 ~ 10513857 (+)
CI01000054_10467566_10471168 NA coding upstream 288332 10467566 ~ 10471477 (+)
CI01000054_10420267_10420899 NA coding upstream 337720 10420156 ~ 10422089 (+)
CI01000054_10797926_10802248 NA coding downstream 2070 10797850 ~ 10802958 (+)
CI01000054_10805413_10815170 ASNS coding downstream 9633 10805413 ~ 10815359 (+)
CI01000054_10884460_10894800 C1GALT1 coding downstream 85804 10881584 ~ 10894954 (+)
CI01000054_10905705_10908903 C1GALT1 coding downstream 106768 10902548 ~ 10909056 (+)
CI01000054_10964288_10964566 UMAD1 coding downstream 168508 10964288 ~ 10964649 (+)
G236128 NA non-coding upstream 20925 10738567 ~ 10738884 (+)
G236115 NA non-coding upstream 30482 10729053 ~ 10729327 (+)
G236036 NA non-coding upstream 168612 10589074 ~ 10591197 (+)
G236023 NA non-coding upstream 203573 10555820 ~ 10556236 (+)
G236149 NA non-coding downstream 51112 10846892 ~ 10847093 (+)
G236150 NA non-coding downstream 54313 10850093 ~ 10850307 (+)
G236195 NA non-coding downstream 131183 10926963 ~ 10949688 (+)
G236176 NA non-coding downstream 218351 11014131 ~ 11075365 (+)
G235560 NA other upstream 367431 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2430221 8325126 ~ 8329716 (+)
G233306 NA other upstream 2454860 8304599 ~ 8304949 (+)
G233024 NA other upstream 3149916 7567523 ~ 7609893 (+)
G232870 NA other upstream 3871306 6887912 ~ 6888503 (+)
CI01000054_11564820_11568338 S100V2 other downstream 769196 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 837196 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 852199 11647959 ~ 11649495 (+)
G236874 NA other downstream 1017908 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 2089122 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014816 pard6gb coding NC_007130.7 CM002903.2 25699329 ~ 25772980 (-)
bowfin (Amia calva) AMCG00021777 pard6g,pard6gb,LOC107731577,LOC105910269,LOC106570232,LOC106588584 coding CM030130.1 CM030130.1 29327998 ~ 29332145 (-)