CI01000054_10872970_10881017 (SDHAF3)


Basic Information

Item Value
gene id CI01000054_10872970_10881017
gene name SDHAF3
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10871104 ~ 10881495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10872970_10881017.mRNA
ATATAAACATGCAATGAAACATATGACCCTTTTTACTGCACTACACAAACCTGAACAGAAACTTCTCTTGATTATCACGACTAAGTTATTGATTTGTAAACATTAACTTTGCAAAAAATGTAATAAATTGTTCTAAATAATGTTGAAATGAACTTTTAATAGGATGGTGGGTGGCGTATTTGAATGCTAAAGTGATTGGCGCCTGTTTTCTTAGTTGCACTACATTCCAATCGGCACCGGAGGGCAGCAGCAGCTCTAATAACACTCATAGCGCTGCGGTGAAGAAGCCTGCATGTACGGTTGGATAATCAACAGTGTAATGTACATATGACCTTTTATAAACTATAATATCAGATCGTTTCGTCTCTTTCATGAGCTATGGTTTTTGGGCTGGTGCACTAACACTGCGTTGATGTGTTCAAAGAGGACGCACTTATCGCTGTATCATATCTAGAGTTGACTGTCAGATTGTGAAGTTATGGCACATTCAGCACATGTATCAGCGGTTCGGTCGTTGTATAAGAGAATCCTGTTACTGCACCGCTTCCTGCCCATAGACCTGCGGGCTCTGGGTGATCAGTATGTGAAAGATGAATTCAGAAGAAACAAGACTGCATCACGGAAAGAGGAAGTCACACGCTTCATGACAGAATGGCAGAACTACAAAGACACCCTACAGACACAGGTGCTGGAAACGATGGGAAGCAAGAAGTTGGTATTTGGTGCTGATTTACCGGAAGAGAAACTCAAAGACTTTCAAGACGAGCAGATCGGGCAGCTTTACGAGCTTATGCTTGAGTCCACAAAAACCAACCGGCAGTTTGATATTCAAGAGGAGGGAACTCCAAAGTAACACCACCCGAAGGGGTAGCCAGCCCGACGGGACATAGTTTGACTTATAAAATACTTTTCTTCATAGCCAAGACTGATGATTACATTAAAATGCTACAAAGAGTCTTCATTGTTGCTGCTTATTAGTGTTTCTGAGGATAAAAGGAAAAAAATAAA
>TU268162
TGAAGAAGCCTGCATGTACGGTTGGATAATCAACAGTGTAATGTACATATGACCTTTTATAAACTATAATATCAGATCGTTTCGTCTCTTTCATGAGCTATGGTTTTTGGGCTGGTGCACTAACACTGCGTTGATGTGTTCAAAGAGGACGCACTTATCGCTGTATCATATCTAGAGTTGACTGTCAGATTGTGAAGTTATGGCACATTCAGCACATGTATCAGCGGTTCGGTCGTTGTATAAGAGAATCCTGTTACTGCACCGCTTCCTGCCCATAGACCTGCGGGCTCTGGGTGATCAGTATGTGAAAGATGAATTCAGAAGAAACAAGACTGCATCACGGAAAGAGGAAGTCACACGCTTCATGACAGAATGGCAGAACTACAAAGACACCCTACAGACACAGGTGCTGGAAACGATGGGAAGCAAGAAGTTGGTATTTGGTGCTGATTTACCGGAAGAGAAACTCAAAGACTTTCAAGACGAGCAGATCGGGCAGCTTTACGAGCTTATGCTTGAGTCCACAAAAACCAACCGGCAGTTTGATATTCAAGAGGAGGGAACTCCAAAGTAACACCACCCGAAGGGGTAGCCAGCCCGACGGGACATAGTTTGACTTATAAAATACTTTTCTTCATAGCCAAGACTGATGATTACATTAAAATGCTACAAAGAGTCTTCATTGTTGCTGCTTATTAGTGTTTCTGAGGATAAAAGGAAAAAAATAAAATTGGCTTTGGGATCAACAGTTATAATAAGATGTTTGAGCTTTAGTGACAGTGCCACCTCTGGTCAAAATGTCATTGCATTGGGAGATATCCCACCCTGCAAAAACTAATTTCTGGGAGATGGCCAACCCGATCTCACGGCAATTCCTACATATTTTACGAGGTGGCTAATTCGTACGGATTCGTACGACCTCACTGCTAAATCGTACGAATTATACAAGTTGCCAAATTCATATGAATTCGTACAAATGACCTACCCTTAACCCCGCCGCTAAACCCACCCATCACTGGGGTTTAGACAAATCGTATGAATTTGTACAAGTGAGGTCATACGAATTAGCCACCTCGTAAAATACGTACGAATTGGTCGTGAGATAGCGTTGAATAATACCAGGTGTAATGGTAATACGTCTTGGCTGACCACTTGTAATTGGTTCCCTGGAAAAAAATACATCTTAATACCAGGTGGAAACAGGCTTTCTCTCGCTCAATTTATGGGATATTGTATAAAAGCCGCTATCAATATGCAGGAGACTCCCAGACCTTCCGGGAGAGGTGGGATGGCTGCATTGGCTGAAAATTTGGCTTAAATTCGCTTTTTTTTTTCTCTCATTCTGCCGTTTTGAACAGATTTGCAATAGTTTTGTTTTTCATGGCAATTCCTTCAAAGTTTGTCCAATCTTCTTCAGGCCAAATTGTATTTTTCTTGGTTTTCAAAGCTAATTGACCTCTAACACACCAAAAAAAGGTGATGTCAAGGATGCTAAACAGGTAGTGAGGCTTTTTATCGGCAGTGGTTTAACATATTGAAAGTTTGTTATTAGACCCTGCCTTATTTTTATCAGCACTGCGGCTCTGTAGTTATTGGGTACATTAACTTGTAAGAACAAAACCACGTTCTGTATGCTAATCCCCTTAGGTCTGTCACTCAGAAGTAAAAAAAATGTAGTCAAATTGGCTTTATTCAGAGCAGCGCCATTACAAGTATGAAAGTGAGGTTGTGAGAGATAGACTTACCGCGTTTTCAATGGCATCCGCTATAAAAAGCTGTATAAAGCTCCTAAATAACTTATAAGTTTCCACAGCTCATATTGTGTGGGTTGTTTTGTCTTCTGAAATTTCTCTGAAAGATATTTTTCCAGTGTTTTATCAGCAGAAAAATCCAAAAACACATTAAATAACAGCATAACCCACTGAAGAGGTGCATGTCTATCCTTCACAGACTCTTTCATTACCATTAAAAATTAAAGATGGTGCTGCTGTGAATAAGGTCTATTGGCCTGACAGTGAAACTAAAGCGCTTTTCTTCATCCACATGGATGAGGAGAATGGCACGACGTTTAATGGTCATTTCCGATGATTGACATCAGAGTTTACCGGTATTTTGGTACTGATGTGTGAATGGTATCTTACCAGTGAAAAGACGAAACGCTGTTGCTTCTGTGAACGGCACATTTTATGTATTTACTGGAAAAGTCGTAATTTTTGGTAATTTATTGGGATTACTGTGTGAAAAGTGCTATTCCCTAATAGCACATGTACATCACAGAGATTTTACATCTGTAAGATGCACTATTGTTTTTTAGAGTGTTTGCTCTTCTGTAATATGTCCCTAAGACGTTTCTTCTAAGACTGTTTTTTCTTTTTTTTTCAGAGAGATTTATCAGACATTTGTACTTAAAAGATGTTTTCCAGATTAAATGCTCTTTAGC

Function

symbol description
sdhaf3 Predicted to be involved in mitochondrial respiratory chain complex II assembly and succinate metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrial intermembrane space. Orthologous to human SDHAF3 (succinate dehydrogenase complex assembly factor 3).

NR:

description
ACN9 protein homolog, mitochondrial precursor

GO:

id name namespace
GO:0005759 mitochondrial matrix cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10872970_10881017.mRNA False 1008 mRNA 0.41 2 10872815 10881495
TU268162 True 2440 TUCP 0.40 2 10871104 10881216

Neighbor

gene id symbol gene type direction distance location
CI01000054_10817235_10819181 TAC1 coding downstream 53453 10816015 ~ 10819362 (-)
CI01000054_10645438_10672411 NA coding downstream 200134 10645142 ~ 10672681 (-)
CI01000054_10518872_10568706 JARID2B, JARID2 coding downstream 304109 10518872 ~ 10568706 (-)
CI01000054_10389232_10412773 MYLIPA, MYLIP coding downstream 460042 10389232 ~ 10412773 (-)
CI01000054_10269355_10363708 NPR1B, NPR1, NPR1A coding downstream 508666 10268720 ~ 10364149 (-)
CI01000054_10910820_10938477 COL28A1 coding upstream 28879 10910374 ~ 10938477 (-)
CI01000054_10949424_10950271 RPA3 coding upstream 67824 10949319 ~ 10951456 (-)
CI01000054_11097818_11099299 NA coding upstream 216213 11097708 ~ 11099334 (-)
CI01000054_11184013_11193925 EYA3, EYA2 coding upstream 302235 11183730 ~ 11193925 (-)
CI01000054_11209592_11214961 NA coding upstream 326554 11208049 ~ 11215113 (-)
G236542 NA non-coding downstream 4817 10867787 ~ 10867998 (-)
G236533 NA non-coding downstream 24260 10848288 ~ 10848555 (-)
G236506 NA non-coding downstream 48042 10772245 ~ 10824773 (-)
G236480 NA non-coding downstream 133967 10738542 ~ 10738848 (-)
G236551 NA non-coding upstream 13436 10894931 ~ 10895319 (-)
G236554 NA non-coding upstream 16972 10898467 ~ 10898951 (-)
G236555 NA non-coding upstream 21637 10903132 ~ 10904729 (-)
G236570 NA non-coding upstream 82803 10964298 ~ 10966446 (-)
G236596 NA non-coding upstream 119832 11001327 ~ 11001582 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1005603 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 1387428 9483147 ~ 9484282 (-)
G235216 NA other downstream 1624277 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 3701142 7165435 ~ 7169539 (-)
G236748 NA other upstream 403699 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 897395 11778890 ~ 11781880 (-)

Expression


Co-expression Network