CI01000054_10884460_10894800 (C1GALT1)


Basic Information

Item Value
gene id CI01000054_10884460_10894800
gene name C1GALT1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10881584 ~ 10894954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_10884460_10894800.mRNA
ACATAAAAAGACTAAAGATTTTTAATATATTAAAAAACATGCAATATTATATTTTTCCTTTCGAATATGTTCAGAAATATACAAATGCGTAAAATATAAAATAATATAATATAATATAATTTTTTTTTTTTTTTAAATGAGAGAAATGTTTGAGGTAACGTTTTCTCAGAATCCTGAAGCCTTATTGGTTCATGTCTGTGCAACTGCACAGACAAAATGGCATTACGCAATGCCAGTGCCAATACGCATAACCTCAAATGTTTCCTTTCGATACGGTTCACTCGCATTGCGTCAGTGGGGAACTTAATCCAATAGTGCCATGCTACAAGCGCAGAACTGAAGCTGCTCTGCGAGCTGACAGCTTGGTGGCTCCTAGATCAGCTGAAAAAGGAGAGACTGCTACACGGTACATATGCTTTTCAGATTGACAACACCTGTGCTTGAAGAGCAGAGATGTCCAGTTTGTAAAATCTGATGAAAGTGGACAGTGAGGACCAGCCGAAGATGGCCCAAGAGGAGGCAATACCTCTAGTGGAGTGGGCCCTCACTCCTAAGGGGCACAACAAGTCCACAGACTTGTAAGCCAGAGCTATCGCATCCACAATTAATTTGGAAAGTTTTTGCTTTGAAACCGATAGCCCTTTATTGTTGCCTCCAAAGCTGACAAACAGCTGCTCTGATTGTCTAAATTGGCCAGAATGCTCAGTATACACTCTAAGGACCCTTACAGGACAGAGTGGATGAGGTGCCTTTGTAACTGGTGTGAAAAATTTATTGATTTAATCTGACTTTTGTTTATTTCCTTCTGTATTTGTATTATTTTTTTTTTTTTATCTTTTTTTTCTTCTCTTAAATTGTTTTATTAATGCTTTATATTTGTCTACATTTGTAAAAAAAAAAGTGAACTTTTGGTTTAGTGAACTTCACGAAATTTTGTTCCTATATTATGGTTCACAAGTTATGTGAAAACAACGCTAAAGTAGCGGAGCTTTTCTTTGGGAATTTGTTGGGGAAGGGAACGTTGTCAGTGGAACACACCTGCGGGGTTTCCTCTTGCACGACATGCGATTGCCTCAGTCTAGTTGTGTATGAGGCCGATGACGCATATGATTTTCGCTTCTCCCCCCAAAAAATATCCTGGTATGGTGATGTTTCTTGTTAAAACGCATATTTGTTGCTGGAAGGATGTGATTGACATATAGTAACATTTAATTGTTAGCTATGATGAAAATGTATTGTTTAATGTGTTATTTGATTTAAATGATGTTCATCGTGACGCTAACTAATTAGCATTGTATGCTTAGTGTGTACCAGAGTGGGAGAAGCTGTCGCCCCGTTGCTCCACTGATTATTTCCCTTAATTACAGGTATGTCGTTCAATCAGTTCTGTTTCAAAAAGAAAAGAGATTTAGTTGACTGATAATGAATGTATATGGTACAGAGAGTGTGTTATGGGAGAAAGAAACGGATTTAATTGTTTATGCTGTCTGTGACGCACTTTGTGCGGCCTGCATATGGTACGGTGCTGAATATATCCCATGTTTTATTCCATTTTTGATACGTAATGTGTGAAATATGGGTTTGTACAAAAGTAGTACAATTGATTTACATTTATATAATTTTTTTCCATTGTTGTATAATATCAGTCTAGTTGTGTATGAGGCCGATGACGCATATGATTTTCGCTTCTCCCCCCAAAAAATATCCTGTGTGTACCAGAGTGGGAGAAGCTGTCAATGTGTGAAATCACTGATTATTTCCCTTAATTACAGTGCTGAATCTCATCAAGTGGTCGTGTGGTCCTTGTGTGTGTGAGAGAGAGTGACCGGTCCAGACACGCTACACCTTCTCGTTCTCCGTGAGTGGAAGAGCTAACAGCACTATCACCTGCGTTCTGAACAGGGTGGAAAGCACTTTCTGCACATAACCTTTTCTTGGCCTAAGGACCATTTTACAGTCGTTAGGACCGAATTCAAGGAAGGAAGGGTCCACAGACAGAGCCTGCAGATTTCCAACTCGCTTGACTGATGCTAAATCGATTGGCCGGCTACTGGGGCGATTTGCCGCAATAGCCGCCACGTATACTTTGAGCGTGGAGGGGGCGTGCCCACCGTCTAGCATCTCCTGCAGAAATGTGAGAACTGTAACAATCTTGCATTTAGCAGGGTCTGTTTTCTGAGCTAAGCACCAACTTGAGAAAACATTTCTGGGCCTAGAGACGCCTTGTGGAAGGGACCCTCGCCTCTGAGATCATTCTCATAACCTTTTGGGGAAGGCCTGACGGCTCCCGTCGAGGGGCCAAACATGCAGGTTCCACAACTCCGGTTGGGGGTGCCAAATCATCCCCCTGTCTGGGAGAGAAGGTCTCTCCTCAGCGGTATGGGATGTGCTGATAGTAGCTGGACCAATTCTGGGGACCACGGCTGGTTCTGCCAGCGTGGTGCCACCAGAAGAACTGAACATGTTTCTTCCTGAATTCGACTAATGACCTGTGGAAGCAGGGCTACAGTAGGGAAGGCAAAAAGGCCCAGATGAGGCCACTTCTGGGCCAGAGCGTCCATTTCTTTCTAGAATTATATCTGGCAGTGGGAGTTCTCTTCCGTCGCGAAGAGATCCACATCTGCCTGACCAGAGGTGCGCAATATTACGTTGACTGCCTGGAGATGGAGTATCCATTCCCTCAAGAAAGGTCCGCCGCATGACTTGTCTGCTCTTACGTTCGAGGAGCCCGGCACATGAACTGTCCTCACTGAGCAGAGGTTCCTCTGTGCCCATAGTAGAAAATAGTTTACCAGTCTGTGCAGAGGGCGAGACACGAGATCTCCTTGGTGGTTTATAGCAACTACCGTCCTGTTGTTCGAGCGGACCAGGACACGATGACCCCTGACATCCGGCTGGAACTACTTGAAGGCCAGATTGCACATGGCGCCCCAGCATGTCTTGGAGGCATATGTCATGACCACTTTCCTCCTGGAAATCGTGCCCAGCATTACCCAGACCTGGTAAAAGCGGGGCGATTTCCAAGGGACCAAGTCTCTCACACCGCAGTGGGTCACCTTGAGAGTGAGAACAGAACAGCTGCACTAGCCCTTAGCCAGAAGGTCAGAGTGTTATGCTGGGTAATGACGCAGCCTCAACACCTGGAATCTAGAACCCGACATGTGCGTGACACATGGGGAAAACGCTGCAACATCGTTTTGTACATGAGCTCGAAGGAGTCTGACTTCCCCACGGTAGGGCTCAACGTGTCAGAAGGACGCAGTCAACTCTACTGGAAGACCATACGGGCCTTCCAGCACATTCATAAGAACCATCTTGAAGATGCTGATTGGTTCCTCAAAGCTGATGATGACACGTTTGTTGTCCTTGAGAATTTGCGCTACAGTCTTTCCAAACACAACACAGAGGAGCCACTGTATTTTGGACGCAAGTTCGCACCATTCGTTGCACAGGGCTACATGAGTGGAGGAGCTGGTTACGTCCTCAGTAAGGAAGCTTTGAGGAGATTTGTGAAGGGTTTTGCTGATGGACTTTGCACACACAACACAGAAGTTGAGGATATTGGATTGGGACGATGCATGGAGACAATGAAAGTTAAGACGGGTGATTCCAGAGACGTGTTGGGGAGACAAACCTTTCACCCTTACCCTCCAGACTATTACCTGCTCAGACAGCTACCCAGACCACGACCTTGGTACCTCCTCTATGAGCATTATGACCCTGTTGAGGGCCCTGGATGCTGTTCAGATTTAGCCATCTCTTTCCACTACATGAATGCAGTAGGAATGCACACACTAGAGTACTACACGTATCACTTACGCCCATATGGATATAAATACAGATTTAACCCAGATTAACTCTTAAATAATAGAAATCTGATGCAAATCTAAAAATAACACAGCATTCAAAATGTCGTCTTTTAAAGCAAAATGTATTAAGGCATGTATACATTACTTCACTATAAGACCATTACATGTAAATCATGTTATATTTATTGTTCTATAATACATA
>TU267841
CCGATGACGCATATGATTTTCGCTTCTCCCCCCAAAAAATATCCTGTGTGTACCAGAGTGGGAGAAGCTGTCGCCCCGTTGCTCCACTGATTATTTCCCTTAATTACAGGTATGTCGTTCAATCAGTTCTGTTTCAAAAAGAAAAGAGATTTAGTTGACTGATAATGAATGTATATGGTACAGAGAGTGTGTTATGGGAGAAAGAAACGGATTTAATTGTTTATGCTGTCTGTGACGCACTTTGTGCGGCCTGCATATGGTACGGTGCTGAATATATCCCATGTT

Function

symbol description
c1galt1 Enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Involved in angiogenesis and kidney development. Is integral component of membrane.

GO:

id name namespace
GO:0016267 O-glycan processing, core 1 biological_process

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_10884460_10894800.mRNA False 4011 mRNA 0.44 3 10881584 10894954
TU267841 True 285 lncRNA 0.42 2 10882678 10883126

Neighbor

gene id symbol gene type direction distance location
CI01000054_10805413_10815170 ASNS coding upstream 66225 10805413 ~ 10815359 (+)
CI01000054_10797926_10802248 NA coding upstream 78626 10797850 ~ 10802958 (+)
CI01000054_10759809_10795763 PARD6G, PARD6GB coding upstream 85804 10759809 ~ 10795780 (+)
CI01000054_10751348_10752449 NA coding upstream 129073 10751295 ~ 10752511 (+)
CI01000054_10601018_10615939 NA coding upstream 265630 10600974 ~ 10615954 (+)
CI01000054_10905705_10908903 C1GALT1 coding downstream 7594 10902548 ~ 10909056 (+)
CI01000054_10964288_10964566 UMAD1 coding downstream 69334 10964288 ~ 10964649 (+)
CI01000054_10985849_11004067 GLCCI1 coding downstream 89134 10984088 ~ 11004096 (+)
CI01000054_11032632_11091062 RIMS3 coding downstream 137678 11032632 ~ 11091062 (+)
CI01000054_11126599_11136327 PTP4A3.L, PTP4A3, MGC131305 coding downstream 229667 11124621 ~ 11137242 (+)
G236150 NA non-coding upstream 31277 10850093 ~ 10850307 (+)
G236149 NA non-coding upstream 34491 10846892 ~ 10847093 (+)
G236128 NA non-coding upstream 142700 10738567 ~ 10738884 (+)
G236115 NA non-coding upstream 152257 10729053 ~ 10729327 (+)
G236195 NA non-coding downstream 32009 10926963 ~ 10949688 (+)
G236176 NA non-coding downstream 119177 11014131 ~ 11075365 (+)
CI01000054_11142387_11149427 NA non-coding downstream 254855 11141982 ~ 11150462 (+)
G236249 NA non-coding downstream 331772 11226726 ~ 11233234 (+)
G236257 NA non-coding downstream 349109 11244063 ~ 11244283 (+)
G235560 NA other upstream 489206 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2551996 8325126 ~ 8329716 (+)
G233306 NA other upstream 2576635 8304599 ~ 8304949 (+)
G233024 NA other upstream 3271691 7567523 ~ 7609893 (+)
G232870 NA other upstream 3993081 6887912 ~ 6888503 (+)
CI01000054_11564820_11568338 S100V2 other downstream 670022 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 738022 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 753025 11647959 ~ 11649495 (+)
G236874 NA other downstream 918734 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1989948 12886994 ~ 12902006 (+)

Expression


Co-expression Network