CI01000054_11097818_11099299


Basic Information

Item Value
gene id CI01000054_11097818_11099299
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11097708 ~ 11099334 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11097818_11099299.mRNA
ATCATCACTAGAGCTCACTTCAGATGTTCTCAGAGATGCAGCGAGAGCGCGCCGACATGCTGGTCAGAAGAAAATACAAGAGATACTCCAAACAGAAAATGACGTACCTGGGTCTGATCGCTTATGTCATTCAAAACGTACCTGAGAAAAGATTAACGTTTCACGAGTTAATGAATGCGGTGACGAATTTTGTGGATGGGGATAGAAAAGGCCTTGAGAATAATATCAGAGTCTGTTTATCATCAAACAGCTGTTTTGTAAAGGTGCCTATAAATCCAGAGTGCCCAAATGCAAAACGCAACTTTTGGAAAGTGGATGATAGTAAAATCACCCCAAAGATACTGCGACGACACTTTCGTGGTTTGAGTGACGTTTTCCCTAACCTTTATGGAAACATGGAAATTCTCTCTGCAAAGAATGTGATGGAAAACAAGGCAACCTACAAACGCCCTGAGGCAGAGAAGAAGTTTACCAGCCCGTTTTCCATTGAGTCACTTTTGCAGCGAGAAAGCAGCATCTCCGTGAGGCACAGACCTGTAGGCCTACATGATTGTGCAACCAGGAACATTGAAAACAAGTTTCTGGGCCGAGCAAATGGAGACAGTGGTTTGGCGTGCAAGAGGAAGACACAGGACTGGCCCAGTCAAACTGCATATGTCAATTTCAGTGGATCATATTCACACTTTTGTTTTCCTACTTACAGTCTGGGCCAAATTAATAATGGATGCAGTCCCCCTAGTGGACCATCCAAGAGGTTGCACTCAGTTTCTGAACTGTCCTATTGTACAGCACCCGAGAGCTTTAGATATTTCACTTTAAATGCTTTGAGCTGGGCCTACATGTAAAACTGCACTTAAAATACACTTAACTTTCTTAGTGTACATATTCCTATACATCTTACTGATTTACTTTGTATTGCTGAAAATATCTGCCAGCTTCTCCATTGCCAAATAAA

Function

NR:

description
forkhead activin signal transducer FAST

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11097818_11099299.mRNA True 955 mRNA 0.42 3 11097708 11099334

Neighbor

gene id symbol gene type direction distance location
CI01000054_10949424_10950271 RPA3 coding downstream 146252 10949319 ~ 10951456 (-)
CI01000054_10910820_10938477 COL28A1 coding downstream 159231 10910374 ~ 10938477 (-)
CI01000054_10872970_10881017 SDHAF3 coding downstream 216213 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 coding downstream 278346 10816015 ~ 10819362 (-)
CI01000054_10645438_10672411 NA coding downstream 425027 10645142 ~ 10672681 (-)
CI01000054_11184013_11193925 EYA3, EYA2 coding upstream 84396 11183730 ~ 11193925 (-)
CI01000054_11209592_11214961 NA coding upstream 108715 11208049 ~ 11215113 (-)
CI01000054_11222307_11238293 NA coding upstream 122837 11222171 ~ 11239750 (-)
CI01000054_11354957_11355910 NA coding upstream 255306 11354640 ~ 11356188 (-)
CI01000054_11365718_11380961 THBS3B coding upstream 265686 11362295 ~ 11380961 (-)
G236601 NA non-coding downstream 64852 11018675 ~ 11032856 (-)
G236591 NA non-coding downstream 92149 11005057 ~ 11005559 (-)
G236596 NA non-coding downstream 96126 11001327 ~ 11001582 (-)
G236570 NA non-coding downstream 131262 10964298 ~ 10966446 (-)
G236555 NA non-coding downstream 192979 10903132 ~ 10904729 (-)
G236633 NA non-coding upstream 36213 11135547 ~ 11137222 (-)
G236662 NA non-coding upstream 53406 11152740 ~ 11153017 (-)
G236663 NA non-coding upstream 53799 11153133 ~ 11153374 (-)
G236664 NA non-coding upstream 59237 11158571 ~ 11158804 (-)
G236666 NA non-coding upstream 68290 11167624 ~ 11167944 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1230496 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 1612321 9483147 ~ 9484282 (-)
G235216 NA other downstream 1849170 9248039 ~ 9248538 (-)
G236748 NA other upstream 185860 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 679556 11778890 ~ 11781880 (-)

Expression


Co-expression Network