CI01000054_11126599_11136327 (PTP4A3.L, PTP4A3, MGC131305)


Basic Information

Item Value
gene id CI01000054_11126599_11136327
gene name PTP4A3.L, PTP4A3, MGC131305
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11124621 ~ 11137242 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11126599_11136327.mRNA
TTATAAAATCAGGTTTAAAAGATAAACAAACACAGTATTGTATTAAACATTGTCCTTTTAATGGTATGTTTAATAACTTTTTAATAATTTACATTTAAGTACAATAAAGTGATACACTTAAAATTTATGAAGTAAACAAATGTTTTAAACAGATTGGCATGCAAAACAACACAGCTTTATATATAATATTAAAGGGATAGTTCACCCAAAAATGAAATTCTGTCATCATTTACTCATCCTCAAGTTGTTCCAAACCTGTATACATTTCTTTGTTCAGCTGAACTCAAAGGAAGATATTTTGAAGAATGTGAGAAACGAAACAGTTCTGGGGCACCATTGACTTCCATAGTATTTTTTTTTTCTACTATGGAAGTCAATGGTGCCCCAAAGCAGCCTGGTTACAAACTTTCTTTAAAATATCTTCCTTTCAACAGAACAAAGAAATTTATACAGGTTTGAAACATTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAAGAATCAGAATATGTGAATGAAAAAATGTAAAACTGTGTAAGTGTAAACAAATGTTCGAAAATAAATATTAAGTATTTTAGTATTTGGTGTTGAATGCCTTTTAGAAATCATGTAAATATTGTTTGAATTGTTTTCTTTTCTGTTACAAATGGGTGTCAGAAACAAAGTTTTTCCACTTTGGTGTAAACAGTCAGTGACTTGGCACTCCAAGACAGTTTTGGCCAAATCCGAAAATTAGTTTTTAGGCGTCTATGTACCTTTAACTGCTGTAGATGCCACTGCTGAAGACACTCGTGTAGGTCCCTGCAGTCTCAGATCTGCGGGGAGGGCTCAGTAAAACTGTACAGCGCAAGAGAGCAGCATTCATACATCAGAATCTCTCACAGTTCGCCTGTGCATCTGACCAATTTGAATTGTAATGAATAACAATAAAAATATTATTTAGAGACATAGCACAGGTAAGTAACAGACTTTTTGATCTGAAATGCTGCATTCAGATGTGATTTTTGTGAATGTCACTTTAGAGTACGATACCTTAAATTTGTTGATCTTTCACTGCTTAACATTGCTAATTTGAGTGATTGCTTGTAACAATTTTGTTAACTTTTAAAGATTAAAAAAAAAAAAAAAAAAGGTATATAACATTTAAAGAGGCAGTGCATGCATTAAAGTGTTTATAACTTTTTATACTTGTGAAACTAATTTTTTAAATTTTTTTCTGATTTTTTTATTTTTTTGTTAAAAAAAAATAGATTTGTACCTTTAAAAAAAAAAAAAAAAAAAAAGTCTGGGGGGAAAAAAGGAAAAAGCCTGGGAAATGTATTTACTCTCATTTTCTGCTTTCTGTAAAACCTCAAGTCCCTATCAGCCTCTGTGTTGTGCAATGTTTTGAGTGCGTGTGCGTGAGTGGGATTGTGTGTGGGTGGGACCGAGGACACTGTATGTAATCTGCGGTCACACACTCATAGTTAACGTGAGCTGCTCTGTCATGTGTGCGTCATGTTTGTCTTCAACGGACTGCCCTGGTTCTGCGTGTCAGGTTATTTCAGAGAAGAAAACTCACTTATCTATTTTTCCGATTCTCTTTCCAACAGCTCTGTTCTTCAGTAGTGGCTTTGTCCATGGCGTTCTTGCAGAGGACTGGAGACTACTGCCACGCTCAACATCTACACGTCTAAACCCGTGGAGAATGTGCTGCGCTCTTTCCACTGATTTCTGGATGCACCGAGACACTCTTCCTTCTACTACTTGTGGTCCTGCCACCCAAAACTCCTCCCAAATCTAATGGGGTGATCTTACCTCTCTGGCTACAGCAAGCCATTAGAGAGAGGATAGAAGATATTGGGGACTTTGAACCTCGAGGAGTTTTGCAGCGTTTTATTCACGAAGAAAGATCAGAGGCATCCATTGGGTGAATTTGCTTGTGAACGGTTTGGACACTGAGTTGGAGGAAGCAAAATGGCTCGGATGAACCGACCGGCCCCTGTGGAGGTGTGCTACAAGAACATGAGGTTCTTAATCACACACAACCCAACAAACTCCACTCTGAGCAGCTTCATAGAGGATCTTAAGAAGTATGGTGCCACAACAGTGGTCAGAGTTTGTGAGATAACCTACGACAAAACCCCACTGGAAAAGGATGGGATCACTGTCGTGGACTGGCCATTTGATGATGGTGCTCCTCCTCCCTCTAAGGTTGTGGAGGATTGGTTGAGTCTCCTGAAGAGACGCTTCATTGAAGACCCCGGCTGCTGCGTGGCTGTGCATTGCGTGGCTGGTTTAGGAAGAGCTCCAGTACTTGTGGCCGTGGCACTGATTGAAAGTGGGATGAAGTACGAAGATGCCATCCAGTTCATCCGACAGAAGCGCAGGGGTGCAATAAACAGCAAGCAGCTGACGTATCTAGAGAAATATCGGCCCAAACAGAGACTGCGCTACAAGCACCCGCACATTTTCAAGAACAAGTGCTGCATCATGTGACTGCACCCTCACCCTACTGTTCTGAACCAAGCTGAACCTGATGGACTGGGCCACAACTGATGCACTTTGCTGATTTGCTATAAAAATATGAACCGATTCGGTCTGGATGAAAACCCCACTGGTGCCTAAAATCCTCCTCACTCTGATTGTGGTGTGGATACTGCCATGGCTTTTCCGAGACTTACGACTTAGAGGTCTGAAAGGCTACGTATCTCTGAGGTTAATGAGATACGACGAAGGCAACCTCTGACCTTTGACCCTGCACCAGGACTGACACCCTAATCATGCCTCAAATGATTGTGATTGTCTAAAAGAGCCAGGCGGTGTGATAATGTGAATCATGGACAAAATTTGTGCTCTTTCTCACTCTCTCTACTACTTATTTTTCTTTCTACTGCTTTCCTACTCTTCCCTGCCAGGAGTCTGATTTTTAGACAACTACGGTTCCTTTAACACTTTTAGTTTTCAGCACAAATCTTTTTACTGTTGACCTTTTCCATGATGCTTTTGTTTTATGAGCAAACAACGGTTAAAGTGGACTAATGAAGGGCTTATGTGAAAGTTATTTCTTTTTCATAAAGCAACTCTTTGCTATTTCTATTAGGTTGAGTGCCAGACACTAAAGGGTTTCTGAAAGCTACATATGAAGGCCAGCGAAGGCCAAGGAATTTAACTGCGAAAATGCTTATGCGTGTTTATGTGCTTAAAATCAAACCTTGTGTTTGTTGGAGTAATTTTAATGTGTTAGGACTTCAGGGCTTCCTGGAGGCAATCTGTCCATGATACTTGTCCAGTCAGGTCAACAGAGATCAGATGGTAAAAAAGGCCCTATATGAATGAATTACCAGACAAGACGGTGGTTTAAAGTTGCTTTCCTCTGTTTTTTAAGAACACACCTCCAGCTGCATAATACAA

Function

symbol description
ptp4a3 Predicted to enable protein tyrosine phosphatase activity. Involved in positive regulation of NIK/NF-kappaB signaling; positive regulation of establishment of protein localization; and regulation of transcription, DNA-templated. Acts upstream of or within endothelial cell migration. Located in cytoplasm and nucleus.

GO:

id name namespace
GO:0043542 endothelial cell migration biological_process

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11126599_11136327.mRNA True 3415 mRNA 0.40 5 11124621 11137242

Neighbor

gene id symbol gene type direction distance location
CI01000054_11032632_11091062 RIMS3 coding upstream 33559 11032632 ~ 11091062 (+)
CI01000054_10985849_11004067 GLCCI1 coding upstream 120525 10984088 ~ 11004096 (+)
CI01000054_10964288_10964566 UMAD1 coding upstream 159972 10964288 ~ 10964649 (+)
CI01000054_10905705_10908903 C1GALT1 coding upstream 215565 10902548 ~ 10909056 (+)
CI01000054_10884460_10894800 C1GALT1 coding upstream 229667 10881584 ~ 10894954 (+)
CI01000054_11142387_11149427 NA coding downstream 4740 11141982 ~ 11150462 (+)
CI01000054_11154206_11157480 NA coding downstream 16887 11154129 ~ 11157830 (+)
CI01000054_11162176_11165636 NA coding downstream 22817 11160059 ~ 11165827 (+)
CI01000054_11171795_11178974 NA coding downstream 34489 11171731 ~ 11179109 (+)
CI01000054_11280613_11285395 NA coding downstream 143371 11280613 ~ 11285395 (+)
G236176 NA non-coding upstream 49256 11014131 ~ 11075365 (+)
G236195 NA non-coding upstream 174933 10926963 ~ 10949688 (+)
G236150 NA non-coding upstream 274314 10850093 ~ 10850307 (+)
G236149 NA non-coding upstream 277528 10846892 ~ 10847093 (+)
G236249 NA non-coding downstream 89484 11226726 ~ 11233234 (+)
G236257 NA non-coding downstream 106821 11244063 ~ 11244283 (+)
G236222 NA non-coding downstream 140169 11277411 ~ 11279005 (+)
G236281 NA non-coding downstream 158907 11296149 ~ 11297001 (+)
G235560 NA other upstream 732243 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2795033 8325126 ~ 8329716 (+)
G233306 NA other upstream 2819672 8304599 ~ 8304949 (+)
G233024 NA other upstream 3514728 7567523 ~ 7609893 (+)
G232870 NA other upstream 4236118 6887912 ~ 6888503 (+)
CI01000054_11564820_11568338 S100V2 other downstream 427734 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 495734 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 510737 11647959 ~ 11649495 (+)
G236874 NA other downstream 676446 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1747660 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location