CI01000054_11154206_11157480


Basic Information

Item Value
gene id CI01000054_11154206_11157480
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11154129 ~ 11157830 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11154206_11157480.mRNA
GTATATATCCATGTAAAAAGGGAAGTTTTTGCATTTACATTGTCATGCTGTAAAGGTTTCTCACATTGGACTGAATCATGGAGGAGAGCTGCCATTTTCTTTGCTATGTATTGAAATATCTGTTTGCTTTGGTGGGATTGTTGTTTTTCCTGCTGGATATAGCGCTGGACATTTGGACTGTTGTGACATTTTATCAGAATGGGGACTATGTGTATATGGCGGTGATGATCTTTCTGCTGCTGGGCTCTTCAGTATTGTTACAGGTGTTCAGCTGGCTCTGGTACTCTGATTGCCTGGATAAGCTTGAGACTAAGGTGGAGACATTTGCAAACAAGCATAAACTGATCAAACCATTTCACTTCCTTCAGCTCGGAGTCTTCCTCAGGTATGCTGGGGTAACAGAAATGTCCACAAAGCATTTTCTTCATCACAGTAAAAGTTTTAAAGAGCGTAAGCCTGACCTGAACCGTGACCTTCATATGCTTCGTCTGTTTGAGGCGTTTTCTGAAAGTGCCCCACAACTCATACTTATGATGTCTAGAATCTTACAGAGAGGAGAGCTGGAGCTTATCACAGGTTTAAAAATCCTCACATCAGCTGCTGCAATAGCCTTTACCATAGCTATGTACCACTGCAGCATGCGTGCCTTTCTTCAAGAAAAAGAAAAGATGAGCTGGATCTCCACTCTCGTCTACTTCCTGTGGAACTTGTTGCTGATCATTCCCCGTGTAACCGCTCTGGCACTCTTTTGCACTGTATTGCCATGGTACCTCATAGCTCACTTCCTGTCTTTGTGGATGCTGCTGGTTTTAGGGGTCTGGAGCCAGAAAACAGATTACATGAAAAGTCCTGGTTGGGAATGGCTCTACAGAGCTACTGTTGGACTCATTTGGTACTTCAGCTGGTTTAAAGTATCAACAGGAAGCATAAAATTAAAGGCTTCTCTCTATTATGGTGTCATGGGATTGGACACATTGACACTGTTGGGCTTCTGGTGCTGGAAGGTGTTTGAGTATTCAGGCTGTTGGCGCTCTTTAAATTCTTACATTGTGATCCCGACACTTATAGGATTGTATTTTGCTGGAATTCTATTGAAAATTATATACTACAGATGGTTTCATCCTAAATGTGATGAACAGAAAATACCTAAACCCAGTGAACAACAGAATAATAGACAACCTGCAGCAATGAATAAGATGGAGACAGACTCCCTGGAATCTTCATCTGAAGAACCTGTTACTGGAGTTCTCAAGAGGGGGAGGACCATGGCTGCTAATTTCTACTACTAGTTCTCCACCCGCCCACCCCTCCCAATTCTATCATAAATTATTAAAATTTAATTGAAGTTTTATTTATAAAAAAGTATTTATGCACAGAATACCTAGTTTTGTACAAAAATAGCACATTTTATTTAATCTTTCTGAAAGAAAAAAAAAAAATTTATCATCTCTTTAAAGTGGTCAAGTTCTCTATTATTTAAATAGAATAATATAGATTTCCTTTACATTTCTGCATGCAACATGCTTTTAGTTTTTAAAATGTAGTTGTGATCATGCATGTTTAATAGAGCAAGACGGGTAAACTGAACTGATTCTGGATAACGAAGCAAAAAATCTGAAATGTATGGTACAATCAATCA

Function

NR:

description
Zgc:103514

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11154206_11157480.mRNA True 1639 mRNA 0.39 3 11154129 11157830

Neighbor

gene id symbol gene type direction distance location
CI01000054_11142387_11149427 NA coding upstream 4006 11141982 ~ 11150462 (+)
CI01000054_11126599_11136327 PTP4A3.L, PTP4A3, MGC131305 coding upstream 16887 11124621 ~ 11137242 (+)
CI01000054_11032632_11091062 RIMS3 coding upstream 63067 11032632 ~ 11091062 (+)
CI01000054_10985849_11004067 GLCCI1 coding upstream 150033 10984088 ~ 11004096 (+)
CI01000054_10964288_10964566 UMAD1 coding upstream 189480 10964288 ~ 10964649 (+)
CI01000054_11162176_11165636 NA coding downstream 2229 11160059 ~ 11165827 (+)
CI01000054_11171795_11178974 NA coding downstream 13901 11171731 ~ 11179109 (+)
CI01000054_11280613_11285395 NA coding downstream 122783 11280613 ~ 11285395 (+)
CI01000054_11289604_11337266 NA coding downstream 131774 11289604 ~ 11337380 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 251424 11409254 ~ 11413131 (+)
G236176 NA non-coding upstream 78764 11014131 ~ 11075365 (+)
G236195 NA non-coding upstream 204441 10926963 ~ 10949688 (+)
CI01000054_10884460_10894800 C1GALT1 non-coding upstream 271003 10881584 ~ 10894954 (+)
G236150 NA non-coding upstream 303822 10850093 ~ 10850307 (+)
G236249 NA non-coding downstream 68896 11226726 ~ 11233234 (+)
G236257 NA non-coding downstream 86233 11244063 ~ 11244283 (+)
G236222 NA non-coding downstream 119581 11277411 ~ 11279005 (+)
G236281 NA non-coding downstream 138319 11296149 ~ 11297001 (+)
G236305 NA non-coding downstream 211265 11369095 ~ 11373596 (+)
G235560 NA other upstream 761751 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2824541 8325126 ~ 8329716 (+)
G233306 NA other upstream 2849180 8304599 ~ 8304949 (+)
G233024 NA other upstream 3544236 7567523 ~ 7609893 (+)
G232870 NA other upstream 4265626 6887912 ~ 6888503 (+)
CI01000054_11564820_11568338 S100V2 other downstream 407146 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 475146 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 490149 11647959 ~ 11649495 (+)
G236874 NA other downstream 655858 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1727072 12886994 ~ 12902006 (+)

Expression


Co-expression Network