CI01000054_11162176_11165636


Basic Information

Item Value
gene id CI01000054_11162176_11165636
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11160059 ~ 11165827 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11162176_11165636.mRNA
CAATAAAAGAGCAGTTTCCTCAATCTTTGGGTCACACAAGGTGTGGTTTGACAGTGAGAGATACAATGCTTCCTCACTCTCATCCCCCTCTTCTTTTGCCACAAAGCAGGAGTCTGTGATATGATACCCTTTCTCAACTTATCCTTTATCATAATTTTTTCCAAAGATGAATGCGGGGGTCTAGTAAGGACATTATCTTGATTTGCTTTAACAAAGCTTCTAATCTGGAGGTATTTGAAAAAATGATTCATATTGAGGCTGAACTTAAGCCTCAACTCCTCAAAGGACATCATAATATCAGAATCTGTCAAATAAAGATCTTGAATCATTTTAAGTCCCTTCGATCGCCACAATTTGAATGTAGCATCTGCTCTTCCTGGTACAAAAAAACTGATTACCCCATATTGGACTATATTGAGATATTGGAGTCTTTTAAATATTTTTGTACATCATACCATATCTTTAACAATTTATCTTTATCTTTAATTGTTTTACAATTGGGTTTTTAGTTTGTTTCCGTAGTTTTTTTTTTTTTGCTGTGTCTGAATACATGTATGAGGGAAGAGATAGGGTTAGATTGTGAGATTCCATTTCAGTCCAATGTGGAGACTCACTTGTTGAAAAGTAGAACATAATAGACCTCAGCTGTGCAGCCCATCACATCACTTTCACTTCACTTACACTAAAGCAGGAATCAGAGTGGTGGTGGCCAGAATATTTACACATCTGCTCCTGTGAACAAAGACCAAAACAATTAGCTCATTGTTAGCGTGTACATTTAAGCAGACGGATCCTTACTGAGAACCCTGTTTAGCATGTTGCTCTAGCACTTCACAGAGTTTAATGCCTAGAGGTGGATCTGATGATTTCCTCTAAATCATGCATGTTCTGAAAACAGAAACAGATGCAGTAGGGCTGGATATGGGTACAGATGCCCCGATTCAATTTGATTCCAATTCACCAGATCTCAGTTAAATTTTATTCAGTTTGTGATGTGATTCTAAATTCAGTTCAATGATAGATTCAATAACAATTCTAATAATACTCAGGTAGGCCTACAAAAATGGAATAAAGTAATCAAATGTAAAATAACACCGCATAGTCTTCACTATATAAATTAAATATAGATTCATTCTTATTAAAGTTACAAATGATATTCAGTCAAGAGCAGTGACAGTGAGTGATTTTTTTCTGTCTTCATGTTTTCATGTTTGTAATGCCTGGTCACTGATTGGTCCCTGATCAAGAAGTCAAACGTGTCATTAAAATAAATTGTCCAGTTTATCCTGGTGGGCATGGCACAGAGTAACCACTGAGTGATAAATCAAATAATAATGTGTTCGTCAGGAGCTGATGTTGCAATGTTGAGAAAACACTTCTTAAAAGTGAAATGATTTCTGTAAATCCAGTGATCAAATGCTGTGTGGTTCTCAGTTTGGAGTAGTGTCTGGTCTGTGTGTGCAATTCCACAAACCTGGAAGACCCTCTATAAGCAGTAGACTTTTTCAGAAAGAAAATTTTAAAAGATAAAAAGATGTATTAGGGAGAATCAACAGGTTATGAATAATTTACTACCATTGTGAGAATAACATGTAATTATGTAATCAATAAAATGTAACTGTAGTCTGATTATGAATATTTTAATACATAATATAATCTAATTACAACTACAAGTACTTCATTTTTGGAACCTGATAACGCAATCCAAATTACATGGAATCAGTTACTGCCCAGCACTGACTGTAAACCAATCAGAATGCTTAAGCAATTGCATGTTAACCCCTAATGACCACCCACAGAATAGATTTTTTTTAGTATTAACTTCACCTACACTTACATAATTATTCCAATATAGTGGCTTTTTTGAAAAAAAATTCTTTAGTACAACCATTTGGGCACTTTGACCATTTGTATGTGAGTCTGGTAATGTGACTCATACATGTTTGTAACTCTGGTCATCACCCATACATGACTAATCTTTGAAGAATAAGAGGAGGAGTTTAATATGTGGGCATAAAGTTTACTTTCTCTTTCAGATCTTTTTAACAGTATCCACATACAAAAAGGAGATTTTATTATTTGTCATGCTGTAAAGGTTTCTCACATTGGACTCAATCATGGAGGAGAGCTTCCCTTTTCATTACTATTTATTGGAATACCTGTTTACTTTGATGGGATTGTTACTTTTTCTGCTGGATATAGCGCTGGACATTTGGACTGTTGTGTCATTTTATCAGAATGGGGACTATGTGTATATGGCGGTAATGATCTTTCTGCTGCTGGGCTCTTCAGTATTGTTACAGGTGTTCAGCTGGCTCTGGTACTCTGATTGCCTGGATAAGCTTGAGACTAAGGTGGAGACATCTGCAAAAAAACTGATCAAACCATTTCACTTCCTTCAGCTTGGTGTCTACCTCAGGTATGCTGGGGTGATAGAGATTTCGACAAAGCATTTTCGTCAAAAAACTAATAGTTTCACAGAGGGTATGGCTGTGTACTTGAACCATGACCTTCAGATGCTTCGTCTATTTGAGGCGTTTTCTGAAAGTACCCCACAACTCATACTTATGATGTCTGTAATCTTACAGAGAGAAGAGCTGGAGCTTACCACAGGTTTAAAAATCCTCACATCAGCTGCTGCAATAGCCAGTACTGTAGCTATGTACCACCGCAGCATGCGTGCCTTTCTTCAAGAAAAACGCAAGATGAGCTGGATCTCTACTGGTGTCTACTTCCTGTGGAACTTGTTGCTGATCATTCCCCGTGTAACCGCTCTGGCACTCTTTTCCGGTGTATTGCCATGGTACATCATAGCTCACTTCCTGTCTTTGTGGATGCTGCTGGTTTTAGGGGCCTGGAGCCAGAAAACAAATCTCATGGAACATTCTGGTTGGGAATGGCTCTACAGAGCTACTGTTGGACTCATCTGGTACTTCAGCTGGTTTAACATATCAACTGGAAGCATAAAATTAAAGACTGTTCTCTATTATAGTGTCATGGGGTTGGACACAACAATGCTGCTGGGCTTCTGGTGCTGGAAGGTGTTTACGTATTCAGGCCGTTGGAGCTCCTTAAATCCTTACATTGTGACCCCGATATTACTAGGTTTGTACGTTTCTGGAATTATATTGAAAATTATATATTACAGATGGTTTCATCCTAATTGTGATGAACAGAAATTAGCTATACCCAGTGAACAAGAGAATAATAGACAACCTGCAGCATATTATGACCTGGAGACAGACTCATTGGAAGCTTCACCTAAAGCTAGAGCTGCAGTTCCTGCTCAACCTGTCACTGGAATTCTCAAGAGGGGGAGGACCATGGCTGCTAATTTCTACTACTAGTTATTGGTTAAATTTTTAACCAACCCCCCAGTTCCATCATAAATTATTTAAATGTAATTAAAGTTTTATTTATAAAAAAAATATTTATACACAGAATACATTTTGTACAAAAATATTTTTTTCTGACAAAATAGATTTTAAAAATATATTTTTTTAATATTTATTAAAAAATAAAACACTTTGCATGAATA

Function

NR:

description
Zgc:103514

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11162176_11165636.mRNA True 3538 mRNA 0.37 3 11160059 11165827

Neighbor

gene id symbol gene type direction distance location
CI01000054_11154206_11157480 NA coding upstream 2229 11154129 ~ 11157830 (+)
CI01000054_11142387_11149427 NA coding upstream 9936 11141982 ~ 11150462 (+)
CI01000054_11126599_11136327 PTP4A3.L, PTP4A3, MGC131305 coding upstream 22817 11124621 ~ 11137242 (+)
CI01000054_11032632_11091062 RIMS3 coding upstream 68997 11032632 ~ 11091062 (+)
CI01000054_10985849_11004067 GLCCI1 coding upstream 155963 10984088 ~ 11004096 (+)
CI01000054_11171795_11178974 NA coding downstream 5904 11171731 ~ 11179109 (+)
CI01000054_11280613_11285395 NA coding downstream 114786 11280613 ~ 11285395 (+)
CI01000054_11289604_11337266 NA coding downstream 123777 11289604 ~ 11337380 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 243427 11409254 ~ 11413131 (+)
CI01000054_11536181_11537063 NA coding downstream 368930 11534757 ~ 11537164 (+)
G236176 NA non-coding upstream 84694 11014131 ~ 11075365 (+)
G236195 NA non-coding upstream 210371 10926963 ~ 10949688 (+)
CI01000054_10884460_10894800 C1GALT1 non-coding upstream 276933 10881584 ~ 10894954 (+)
G236150 NA non-coding upstream 309752 10850093 ~ 10850307 (+)
G236249 NA non-coding downstream 60899 11226726 ~ 11233234 (+)
G236257 NA non-coding downstream 78236 11244063 ~ 11244283 (+)
G236222 NA non-coding downstream 111584 11277411 ~ 11279005 (+)
G236281 NA non-coding downstream 130322 11296149 ~ 11297001 (+)
G236305 NA non-coding downstream 203268 11369095 ~ 11373596 (+)
G235560 NA other upstream 767681 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2830471 8325126 ~ 8329716 (+)
G233306 NA other upstream 2855110 8304599 ~ 8304949 (+)
G233024 NA other upstream 3550166 7567523 ~ 7609893 (+)
G232870 NA other upstream 4271556 6887912 ~ 6888503 (+)
CI01000054_11564820_11568338 S100V2 other downstream 399149 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 467149 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 482152 11647959 ~ 11649495 (+)
G236874 NA other downstream 647861 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1719075 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014803 xkr8.2 coding NC_007130.7 CM002903.2 24994270 ~ 25005609 (-)