CI01000054_11171795_11178974


Basic Information

Item Value
gene id CI01000054_11171795_11178974
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11171731 ~ 11179109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11171795_11178974.mRNA
GTATATATCCATGTAAAAGGGAGGTTTTTGTATTTACTTTGTCGTGCTGTAAAGGTTTCTCACAATGAACTCAATCATGGAGAAGAGCTTCCCTTTTCATTACTCTTTATTGGAATACCTGTTTACTTTGGCAGGATTTTTTTTTTTCCTGTTGGATATAGCGCTGGACATTTGGACTGTTGTGTCATTTTATCAGAATGGGGACTATGTGTATATGGCGGTGATGATCTTTCTGCTGCTGGGCTCTTCAGTATTGTTACAAGTGTTCAGCTGGCTCTGGTACTCTGATTGCCCGGATAAGCTTGAGACTAAGGTGGAGACATTTGCAAACAAGCATAAACTGATCAAACCACTCCACTTCCTTCAGCTTGGAGTCTTCCTCAGGTATGCTGGGGTGATAGAGATTTCCACGACACTTTTTTTTCAACAAAGAAGAAACACAGAGGGTGTTGCTCTGTACCTGATCCATGACCTTCAGATGCTTCGTATGTTTGAGGCATTTTCTGAAAGTGCCCCACAACTCATACTTATGATGTCTATAATCTTACAGAGAGGAGGGCTGGAGCTTATTACAGGTTTGAAAATCCTCACATCAGCTGTTGCAATAGTCTTTACCATAGCTTTTCCCATACGTACATTTGTGCGTGCCTTTCTGCAAGAAAAATTTGAGATGAGCTGGATCTCCACTGGTGTCTACTTCCTGTGCAACTTGTTGCTGATCATTCCCCGTGTAACCGCTCTGGCACTCTTTTGTAGTGTATTGCCATGGTACCTCATAGCTCACTTCCTGTCTTTGTGGATGCTGCTGGTTTTAGGGGTCTGGAGCCAGAAAACAGATTACATGAAAAGTCCTGGTTGGGAATGGCTCTTCAGAGCGACTATTGGACTCATTTGGTACTTCAGCTGGTTTAAAGTATCAACAGGAAGCATAAAATTAAAGAATGCTCTCTATTATGGTGTCATGGTGTTGGACACATTGATGCTGCTGGGCTTCTGGTGCTGGAAGGTGTTTGAATATTCAGGCTGTTGGAGCTCCTTAAATCCTTACATTGTGACCCCGATATTACTAGGTTTGTACGTTTCTGGAATTCTATTGAAAATTATATACTACAGATGGTTACATCCTAACTTAGATGAACAGAAAATACATAAAACCAGTGAACAACAGAATATCAAACAAGCTTCAGCATTTTATAACATGGACTCAGACTTCCTGGAATCTTCATCTGAAGATACAGCTGCAGCTCCCACTCAGCCTGTCACTGGTGTTCTCAAGAGGGAGAGAGCCATAACTGCTGATTTCTCCTTCTAGTTCTTGGTTTAACTTATGTAATTATCATTCAACAAATGTAATTAAAAAAGTATTTATACACAGAATACATTGTTTTGTGCTAACATAGCTATTTTCTTAATAGCTACAACTTTTATAAAATTTTTCTGGAAAAAA

Function

NR:

description
Zgc:103514

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11171795_11178974.mRNA True 1447 mRNA 0.40 3 11171731 11179109

Neighbor

gene id symbol gene type direction distance location
CI01000054_11162176_11165636 NA coding upstream 5904 11160059 ~ 11165827 (+)
CI01000054_11154206_11157480 NA coding upstream 13901 11154129 ~ 11157830 (+)
CI01000054_11142387_11149427 NA coding upstream 21608 11141982 ~ 11150462 (+)
CI01000054_11126599_11136327 PTP4A3.L, PTP4A3, MGC131305 coding upstream 34489 11124621 ~ 11137242 (+)
CI01000054_11032632_11091062 RIMS3 coding upstream 80669 11032632 ~ 11091062 (+)
CI01000054_11280613_11285395 NA coding downstream 101504 11280613 ~ 11285395 (+)
CI01000054_11289604_11337266 NA coding downstream 110495 11289604 ~ 11337380 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 230145 11409254 ~ 11413131 (+)
CI01000054_11536181_11537063 NA coding downstream 355648 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 385711 11564820 ~ 11568999 (+)
G236176 NA non-coding upstream 96366 11014131 ~ 11075365 (+)
G236195 NA non-coding upstream 222043 10926963 ~ 10949688 (+)
CI01000054_10884460_10894800 C1GALT1 non-coding upstream 288605 10881584 ~ 10894954 (+)
G236150 NA non-coding upstream 321424 10850093 ~ 10850307 (+)
G236249 NA non-coding downstream 47617 11226726 ~ 11233234 (+)
G236257 NA non-coding downstream 64954 11244063 ~ 11244283 (+)
G236222 NA non-coding downstream 98302 11277411 ~ 11279005 (+)
G236281 NA non-coding downstream 117040 11296149 ~ 11297001 (+)
G236305 NA non-coding downstream 189986 11369095 ~ 11373596 (+)
G235560 NA other upstream 779353 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2842143 8325126 ~ 8329716 (+)
G233306 NA other upstream 2866782 8304599 ~ 8304949 (+)
G233024 NA other upstream 3561838 7567523 ~ 7609893 (+)
G232870 NA other upstream 4283228 6887912 ~ 6888503 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 453867 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 468870 11647959 ~ 11649495 (+)
G236874 NA other downstream 634579 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1705793 12886994 ~ 12902006 (+)

Expression


Co-expression Network