CI01000054_11280613_11285395


Basic Information

Item Value
gene id CI01000054_11280613_11285395
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11280613 ~ 11285395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11280613_11285395.mRNA
ATGGCCATGAAGGAAATGGTTATTGAAGTAAATGGGCTCCCTGACCACTACTCCAAAAATATGATGATTGACAAATTAACCATGCACTTTCTGAGGCGCAGTAACAAAGGAGGAGATGTTTTAACAGTGATTTATCCCACCTCCAACAAAGGCCAGGCTTATGTTGTCTTTGAATCAGCCGAAGTACCTGGGGTCTTGCAACACACACATGTTTTGATAGTGGAGAGTCAGTTTTACCCACTGGACATTAAAAAGGTGCATCAACCTCAGCTGGACATGCCAGCCGAAGCACTCCTCGAAATGAACACGTTCTCCAATCACAGAAAAATCCAAGAACTTCTTCATAGCCATGGCTTTCAGGTGTCAGAGACCAGCCCAGGACAGCTGCATTTGCAGGGTTCCTTTCTCAAGCTAAAACTCATCTATCCCAAACTTGTGCAGTTTCTGGCTCAAGAAACTCACCATCAAAGAGGAACACCTTCGCATTACACTAATGGCTACTCCTCTGTCTCCAGAGGTGAAAAAAGTGACTCCAGTGACTATGAATCCAGATCTAATTTCACATCGATGCGCACTCACAACAATGGCAACTCCGTATATGCTGAGGGCAGCAGCACATCTTCAGGAATAACCTCAAGATCCACAGAGTCCCAATACCGACAGGCATTCTTGCAGAATGCATCTCTACTGGATAGAAGCTCTAGCACAGAAAGTCCCTTTAGCAGTCCCTCCAGGATGTATGAGGATTCCCGCACAAGCGTTCAGCAGCGGAATCCCTCGTCTCCCAGGCAAAATGAGGAAATCAGTGATTCTGTGCGCACACAAGAAATAGACATGAACGCATGTGACGAAAGTCAGAAGAAATACATTATCCAGAAAGCGTACTCATTCCAAAAGATCTACAATGTTTTAATTAGAAAGGAAGGTAACATTATTAAAGTGGTGGGGTCATCAAAAGACAGTTATGAAGCAAAGCAAAAGCTTCTTGGCCGGGATGTTGACATTGCACTGCCTAAACGCATGGAGAGGAACATTTTGCGCCGCAGCAGCTCTTTGCCAAGACAAAAAACAAGGGCCAGAATGGAGAACCTAGACATAGATCAAATTCCAGCTACTGTTAGTAGCTTCTCTGCCTCACATTCCCAAACAGACTCTCAGCAAGCAAGCAAGCAAGAAGTTCAACAGGAAAGAGGTCGCCAGCCTTCTAAATCCACTGCACATAGCAGATCACAGAGCGGCTCTCGATTACAACACAGAAATCAAAAGAGTGTAAAGCAAGAACCACCAACCTCTGTTCAGCAGGATTTGACACCCTCTAGTGGAGTTCAGAAATCTAAACAAGGGCCACTACCTAAATTAAAAGCTGCTCTTTTTCCTGATAAAAGTAAAACTCCTGCAGGCATGGCGGAGCTGGAGGGCTTGGAGTTCGGAAAGTCAGACTTTGTGCTTCTAGATGAGGTCACTATGGAGCAGTTTATGGAGAATTTGAAGTTAAG

Function

NR:

description
LOC100007493 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11280613_11285395.mRNA True 1496 mRNA 0.45 5 11280613 11285395

Neighbor

gene id symbol gene type direction distance location
CI01000054_11171795_11178974 NA coding upstream 101504 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 114786 11160059 ~ 11165827 (+)
CI01000054_11154206_11157480 NA coding upstream 122783 11154129 ~ 11157830 (+)
CI01000054_11142387_11149427 NA coding upstream 130490 11141982 ~ 11150462 (+)
CI01000054_11126599_11136327 PTP4A3.L, PTP4A3, MGC131305 coding upstream 143371 11124621 ~ 11137242 (+)
CI01000054_11289604_11337266 NA coding downstream 4209 11289604 ~ 11337380 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 123859 11409254 ~ 11413131 (+)
CI01000054_11536181_11537063 NA coding downstream 249362 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 279425 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 315111 11600506 ~ 11608390 (+)
G236222 NA non-coding upstream 1608 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 36330 11244063 ~ 11244283 (+)
G236249 NA non-coding upstream 47379 11226726 ~ 11233234 (+)
G236176 NA non-coding upstream 205248 11014131 ~ 11075365 (+)
G236281 NA non-coding downstream 10754 11296149 ~ 11297001 (+)
G236305 NA non-coding downstream 83700 11369095 ~ 11373596 (+)
G236362 NA non-coding downstream 222030 11507425 ~ 11507904 (+)
G236373 NA non-coding downstream 264209 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 311871 11597266 ~ 11597518 (+)
G235560 NA other upstream 888235 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2951025 8325126 ~ 8329716 (+)
G233306 NA other upstream 2975664 8304599 ~ 8304949 (+)
G233024 NA other upstream 3670720 7567523 ~ 7609893 (+)
G232870 NA other upstream 4392110 6887912 ~ 6888503 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 347581 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 362584 11647959 ~ 11649495 (+)
G236874 NA other downstream 528293 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1599507 12886994 ~ 12902006 (+)

Expression


Co-expression Network