CI01000054_11289604_11337266


Basic Information

Item Value
gene id CI01000054_11289604_11337266
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11289604 ~ 11337380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11289604_11337266.mRNA
GTTTGAGAAGGGCCGTATCTACACTTTCATTGGAGAAGTAGTGGTGTCAGTCAATCCGTACAGACAGTTAGATATCTATGGGAAGGAGGTCATTGAGGACTACAGGGGCAGAGAACTATATGAGAATCCACCTCACCTGTATGCAGTTGCAGATGCCGCTTATAAAGCTATGAAGAGACGAGCCAAAGACACATGCATCGTCATTTCAGGTGAGAGTGGAGCAGGCAAGACTGAGGCAAGCAAGTACATTATGCAGTACATTGCAGCTATTACCAACCCTAACCAGAGGGCAGAGGTTGAGAGTGTGAAGAACGTACTCCTGAAATCCAACTGTGTGTTAGAGGCCTTTGGAAATGCAAAGACCAACCGCAATGACAACTCTAGCCGCTTCGGGAAATACATGGACATCAACTTCAACTTTAATGGAGACCCCACAGGAGGACACATCAACAACTACCTGCTGGAGAAGTCAAGAGTTGTTCAACAGCATGAGGGAGAGAGAAACTTCCACTCATTTTATCAGGTGTTACGGGGAGGTTCTGATGATTTGCTGAAGTCCTTATATCTGCAGAGAGATCCCGCAGGATATACCTACACCAGTCAAGGAGCCTCTGTCACACTTGCGTCAAATAACGACTCCTTATGTCACAAAGCTGTGATGGCAGCACTAAAAGTGATTGGCTTCACTGCCGAAGAGATCAGCTCCATCTACAAGATCCTTGGTACCATCCTGCACCTGGGTAACCTTCAGTTTACTACTGATGGTGAACATGTCGTACTTGTCGGAGAAGACACATTGAAGCACATTTCTGAGTTGACGTCCACAGAGTCTGAGAATGTCACAAAAGCACTTCTGTACCGCACAGTGGCAACCGGGGGTGGTGAGGTAATCGAAAAGGGACACAACGAGCAGGAAGCTAGCTATGGAAAAGACGCTTTTGCCAAGGCTTTATATGAGAGATTGTTTGCGTGGATAGTGGGTCGTATCAATGCTGTTATTGAAGTCAAGGACTACAATCCTGCCCTGCATGGCAAAAACACTGTTATAGGTGTGCTGGACATCTATGGCTTTGAGATATTTGACAACAACAGCTTTGAGCAGTTTTGCATTAACTACTGCAACGAGAAGCTACAGCAGCTCTTCATCGAGCTTATTCTACGTCAGGAGCAGGACGAGTACCAGAGAGAGGGTATCACATGGCAACATATTGAATACTTTAACAATCAGATCATAGTGGACTTAGTGGAGCAGCCTCATAAGGGGATCATCTCGGTCCTGGATGAAGCCTGTCTCACTGCAGGGAAAGTCACAGATACCGTCTGCCTGGACAGCATGAACAAAAAGCTCGGCCAGCATCCTCACTACACGTCCCGGAAACTCTGTCCTGCAGACAAGACCATGGAGTTCAATCGAGACTTCCGTATCCGACACTACGCAGGAGATGTTACATCTGTTTCTCGTGAATTTGAGGGGGTGAACCGTGAAAGCCGGTACTCAGTTGAGGGTTTTCTTGACAAGAACAAGGACCCGCTTTTCCAAGATTTCAAGCGACTGATGTACAACAGTTCTGACCCCGTCCTCAAAGAAATGTGGCCTGATGGAAAAATGAGTATTACAGAGGTGACCAAACGACCTCTAACTGCAGCTACGCTCTTCAAAAACTCTATTATTGCTCTAGTGGACAAACTGGCCTGTAAGGAGCCCTACTATGTGCGCTGTATAAAGCCAAATGAGGTGAAGTCCCCCTTAATGTTTGATGACGGACGCTGCGAGCACCAAGTGGCGTACCTGGGACTTTTGGAGAATGTCCGTGTGCGCCGAGCTGGGTTTGCCTACAGACAGCCTTATGCACGCTTTCTGCAGAGGTACAAGATGACTTGTGAATACACGTGGCCCAATCACCTGATGAGCACTGATCAGGAGGCTGTGGAGGCCATTGTGAACCAACATGGCTTTGAGGATGATGTAGCATATGGCCACACCAAGCTATTCGTGAGAACGCCTCGCACGCTCTTCACACTGGAGCAAGAGAGAGCTGCACTCATCCCCATATTAGTGCTGTTCTTACAAAAGGTATGGAGAGGTGCATTAGCACGTATGCGTTGTAGGAAAATACGGGCGATCTATACCATAATGGCACATTATAAATGCTATAAGGTGAAGGCTCACTTCTGGGAAGTGGATAGACGTTTCACCAACGTTCGAAACATGGCCGACTATGGGAAGAGTGTAGAGTGGCCGACACCACCTGCGGCCCTGGTGCAGTTTCACAGAATCACACAACACCTCTACCGCCGATGGTGGGCAAGGCAGCTGATCAAAAACATCCCCCCGTCTGACATGGCAGAGGTGAGGGCTAAAGTAGCTGCTCTGTCAGCCCTGAGTGGGGAGAGAGTGGACTGGGGCTACAGCCGTGCCTGGGAGAGAGACTACTTGGCCAATGCAAAGGACTCTCCTTTGACAAGCACCAACTTTGTGCGTATCACTAAAGAGCTGAAGAACAAAGACCAGTACGCCCAGGTCCTCTTTTCAAGCTCTGTCAGAATGCTCAACTGGTTCAACAACACAAAGGACAGAGCTCTACTCATCACTGACAAGCATATTTACAGACTGGAGCCCAAAAAACACTTTAAAGTGCAAAAACGAATATCTCTTGATTCAGTGGTTGGTTTAAGCGTAACAAGTGGCAGTGACCAGATGGTGGCGCTACATACTGCCTCTCAGGATGACGTTCTAGTGTACTTGCAGAGGGGTCAACTGAACCCAAATCAAGACCGCGTAGGGGAATTGGTGGGCGCCCTTACAGACCACTTTACACGAGTGAAGAACACTCCTCTGCCAGTGAAAGTGTGCTCCACTGGAGTCCAGGTACACATGAGTGGCAAACCTAAGAGTATCACCGTAGAGACCAAACCCGGCCAGACCATCGCAGACTTCAAGAAGAGTCGAGCAGGATTCACCTTACTGCTGCCCCATCAGTAATGCCAAAGCTTCACAGGACATGACATAAAACAGTATTTACGCATTCAGTTAGGGATGGAGCCATAACTTCCATAGATTCCCCATCATATCAAACAGGATTGGATATTTCTGTAT

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component

KEGG:

id description
K10356 MYO1; myosin I

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11289604_11337266.mRNA True 3097 mRNA 0.48 22 11289604 11337380

Neighbor

gene id symbol gene type direction distance location
CI01000054_11280613_11285395 NA coding upstream 4209 11280613 ~ 11285395 (+)
CI01000054_11171795_11178974 NA coding upstream 110495 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 123777 11160059 ~ 11165827 (+)
CI01000054_11154206_11157480 NA coding upstream 131774 11154129 ~ 11157830 (+)
CI01000054_11142387_11149427 NA coding upstream 139481 11141982 ~ 11150462 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 71874 11409254 ~ 11413131 (+)
CI01000054_11536181_11537063 NA coding downstream 197377 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 227440 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 263126 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 295579 11632959 ~ 11635103 (+)
G236222 NA non-coding upstream 10599 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 45321 11244063 ~ 11244283 (+)
G236249 NA non-coding upstream 56370 11226726 ~ 11233234 (+)
G236176 NA non-coding upstream 214239 11014131 ~ 11075365 (+)
G236305 NA non-coding downstream 31715 11369095 ~ 11373596 (+)
G236362 NA non-coding downstream 170045 11507425 ~ 11507904 (+)
G236373 NA non-coding downstream 212224 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 259886 11597266 ~ 11597518 (+)
G235560 NA other upstream 897226 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2960016 8325126 ~ 8329716 (+)
G233306 NA other upstream 2984655 8304599 ~ 8304949 (+)
G233024 NA other upstream 3679711 7567523 ~ 7609893 (+)
G232870 NA other upstream 4401101 6887912 ~ 6888503 (+)
CI01000054_11648262_11648786 NA other downstream 310599 11647959 ~ 11649495 (+)
G236874 NA other downstream 476308 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1547522 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014797 myo1g coding NC_007130.7 CM002903.2 24640467 ~ 24745894 (-)
bowfin (Amia calva) AMCG00002396 NA coding CM030136.1 CM030136.1 13152368 ~ 13179775 (-)