CI01000054_11409512_11412290 (TXNIP, TXNIPA)


Basic Information

Item Value
gene id CI01000054_11409512_11412290
gene name TXNIP, TXNIPA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11409254 ~ 11413131 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11409512_11412290.mRNA
GTATAAAACCCTAGCCTAGCCCAGCGTGTACAAATCTCATATACTAACCATGCGAACCAGGAGTCTGTGAATTGAGAATCTGCATAAAGCACTTGTTTGCTGCAATTCATATCCTGCTAAACTTTAATTAGTTTTGGCTGAAGATTGGATGCACGTTTTTGAAGGACTGCTAAATACCTGGCTGATTTAACAACTTTTAGTTGCTAAGAGACGCGTATCTTCATTTCTTTTTAGCGTGTCAATTTTCAAGACATCACAATGGTGGCGATGACAAAAAGAGTCAAGGCCTTCGAGATCGTTTTCAACGATCCATCCAAGACATTTTACTGCAGTGGAGATAAAGTGGCTGGGAAGATCTTGGTGGAGGTTTCGGAAGTGACCAGGGTGATGGCCATGAGGGTCGTGGGAGTCGGATGCGCTAAAGTGGAGTACGCGAAAGGCAAACAGAGATGCCGTGAAGAAATTGACTATCTGAAGTATGAAGAGGTTGTCCACCTGGATGACCATCCCGCCGACACAGATGGTTCAGTCATTCTTCGTCCTGGCAACAAGTACGAATACACATTTGGCTTTGAGCTTCCTCAACAAGGGCAGCTGGTGTCTTCCTACAAGGGCAAGTTTGGGTTTGTTCAATACTTTGTGAAGGCTTTGATGGATAGACCCTCTCAACCTGCCCTGGAGTGTAAGAGACACTTCGAAGTTGAAGAGCCCTTGGATGTCAACACTCCAGACTTGCTGTCCCCTACTGGAGGCATGAAGGAGAAGAAGGTCACCTGCATGTTCATCCCAGATGGCCAGGTTTCACTGAACGCCAAGATTGACAGGCGTGGCTTCTGCGAGGGCGAAGAGATATGCATTGATGCTAAATTTGAGAACACCTGCTCTCGCATCGTGGTACCCAAAGCAGCCATCATCGCCAAGCACACCTACCAGGCCAATGGCCGCACTAAAGTCTTCAGGCAAAAACTCTCCTCAGTGCGTGGCAACCATATCATCTCCGGCATGTGCGACGCCTGGCAGGGGAAGAGCATTCGTGTGCCTAAGATCAAGCCCTCCATCTTAGGGTGCAACATCATTCGAGTGGAATACGCGCTCATGATTTACATGCACATCCCTGGCAGCGATAAGTTGGTTCTGGAGTTGCCTCTGGTCATTGGGACCGTTCCATACAATGGCTTTGGTAGCCGCACCAACAGCATGAGCAGCCAGGATGGTTCCGTCAGCACAGCGTCGGCGAGCTGGGTGTCCCTGCAAATGCCGTCATCCGCCCCACCAAGCTACTGTGACCTTAGACGCGACTGCAGCCTGGATCAACCTCTCACGCCTCTGTTGGATGACTATGATGGTGGAGACAGTCCCATCTTCATGAACGCACCCCAATTCCAGTTCCCCCCACTCCCTGCTTATTCTGAGGGTCTGAAAGAGGGCACACGGACTGTTTGGCGATTTGTATTTCATTATGTTCGAGCTGCTCCTTCTTGATATGAGATTACTGCTGAGGTGCAAACTGATTGTGCCGCATTATAGCCATTTAAGCACACATAGACTTTCCCAATTGGTGGTCATGTACTTTCCCATAGTCCCCAACATAATATTCATTAGCATTCAGCTCTTTTTCGCTATCATTCCATAACAACCCAATGTTTGTTTTTTTGTGGGATGAAATGTTTCATTTGTTAGAAACATTCTTCAATGCATTTGTTTTTTATGTTGGTTTTGAGGTTAAGTCAATGTGCTAGCCAGAGATATATTATTCTAAGTTACTTAAATGTAAAGAAGAAATGTAGTATATCAATATTTTCATCAAAGGGAAAATCATGTGTCAGTCTGTAATGTACCAGTGTTTTGTTTTTCATTTGAATGCACTTTTTATGGATGCAAGTTGCTGTATAACTACTCGCAGGGAGATTTTCGTTTTGTTGTTTTCATTTGTCTTCCAAAATTGTTCGCTGAGGGATCAGGGCATTACGTGCTCAATTCAAGACTCAGTACTGTGATGCGTTTAAAACCTCGTCCTAAGAAAGGGCTCCACTGATGTTGTCTCTTCCACTGTGGACTTAAACATTAGGCCAAAAAAGAACTTGATACTTCAAGTGCCAAAATTGGGGTCTGTTTGGACTTCGAGCCCTGACCACGTTCCTTTGTGAGACCAGAAGCTGCACTATGTGTAGACATATCCTGAAGACATTTTGATCAACATTTTACTTGTGGATATCTTTCTTAAATTCTTGTTTGTGTCTGTGTGTTGTTTTGTTTCTTATAGAATGTAAGATGACTGTTACTGTTATTATAAACTGTGCAAAGTATCTTTTTTGTATCTAAA

Function

symbol description
txnipa Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; endocrine system; mesoderm; and nervous system. Orthologous to human TXNIP (thioredoxin interacting protein).
txnip Enables ubiquitin protein ligase binding activity. Involved in cellular response to tumor cell; keratinocyte differentiation; and negative regulation of cell division. Located in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11409512_11412290.mRNA True 2323 mRNA 0.45 6 11409254 11413131

Neighbor

gene id symbol gene type direction distance location
CI01000054_11289604_11337266 NA coding upstream 71874 11289604 ~ 11337380 (+)
CI01000054_11280613_11285395 NA coding upstream 123859 11280613 ~ 11285395 (+)
CI01000054_11171795_11178974 NA coding upstream 230145 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 243427 11160059 ~ 11165827 (+)
CI01000054_11154206_11157480 NA coding upstream 251424 11154129 ~ 11157830 (+)
CI01000054_11536181_11537063 NA coding downstream 121626 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 151689 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 187375 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 219828 11632959 ~ 11635103 (+)
CI01000054_11637464_11637950 NA coding downstream 224202 11637333 ~ 11638191 (+)
G236305 NA non-coding upstream 35658 11369095 ~ 11373596 (+)
G236281 NA non-coding upstream 112253 11296149 ~ 11297001 (+)
G236222 NA non-coding upstream 130249 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 164971 11244063 ~ 11244283 (+)
G236249 NA non-coding upstream 176020 11226726 ~ 11233234 (+)
G236362 NA non-coding downstream 94294 11507425 ~ 11507904 (+)
G236373 NA non-coding downstream 136473 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 184135 11597266 ~ 11597518 (+)
G236848 NA non-coding downstream 201506 11614637 ~ 11614917 (+)
G235560 NA other upstream 1016876 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3079666 8325126 ~ 8329716 (+)
G233306 NA other upstream 3104305 8304599 ~ 8304949 (+)
G233024 NA other upstream 3799361 7567523 ~ 7609893 (+)
G232870 NA other upstream 4520751 6887912 ~ 6888503 (+)
CI01000054_11648262_11648786 NA other downstream 234848 11647959 ~ 11649495 (+)
G236874 NA other downstream 400557 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1471771 12886994 ~ 12902006 (+)

Expression


Co-expression Network