Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000054_11600741_11608257 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 11600506 ~ 11608390 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| perforin-like protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000054_11600741_11608257.mRNA | False | 3082 | mRNA | 0.42 | 7 | 11600506 | 11608362 |
| TU268601 | True | 643 | lncRNA | 0.38 | 1 | 11607748 | 11608390 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_11564820_11568338 | S100V2 | coding | upstream | 32056 | 11564820 ~ 11568999 (+) |
| CI01000054_11536181_11537063 | NA | coding | upstream | 63342 | 11534757 ~ 11537164 (+) |
| CI01000054_11409512_11412290 | TXNIP, TXNIPA | coding | upstream | 187375 | 11409254 ~ 11413131 (+) |
| CI01000054_11289604_11337266 | NA | coding | upstream | 263126 | 11289604 ~ 11337380 (+) |
| CI01000054_11280613_11285395 | NA | coding | upstream | 315111 | 11280613 ~ 11285395 (+) |
| CI01000054_11633235_11635069 | PRF1.8 | coding | downstream | 24597 | 11632959 ~ 11635103 (+) |
| CI01000054_11637464_11637950 | NA | coding | downstream | 28971 | 11637333 ~ 11638191 (+) |
| CI01000054_11648262_11648786 | NA | coding | downstream | 39597 | 11647959 ~ 11649495 (+) |
| CI01000054_11659093_11663413 | THAP7 | coding | downstream | 50731 | 11659093 ~ 11663607 (+) |
| CI01000054_11666236_11693431 | NA | coding | downstream | 57874 | 11666236 ~ 11693479 (+) |
| G236822 | NA | non-coding | upstream | 2988 | 11597266 ~ 11597518 (+) |
| G236373 | NA | non-coding | upstream | 49810 | 11549604 ~ 11550696 (+) |
| G236362 | NA | non-coding | upstream | 92602 | 11507425 ~ 11507904 (+) |
| G236305 | NA | non-coding | upstream | 226910 | 11369095 ~ 11373596 (+) |
| G236281 | NA | non-coding | upstream | 303505 | 11296149 ~ 11297001 (+) |
| G236848 | NA | non-coding | downstream | 6275 | 11614637 ~ 11614917 (+) |
| G236849 | NA | non-coding | downstream | 8465 | 11616827 ~ 11617146 (+) |
| G236851 | NA | non-coding | downstream | 14243 | 11622605 ~ 11622853 (+) |
| G236852 | NA | non-coding | downstream | 19924 | 11628286 ~ 11628516 (+) |
| G236853 | NA | non-coding | downstream | 20345 | 11628707 ~ 11629027 (+) |
| G235560 | NA | other | upstream | 1208128 | 10388136 ~ 10392378 (+) |
| CI01000054_08325126_08329621 | HPCAL4, VSNL1, VSNL1.S | other | upstream | 3270918 | 8325126 ~ 8329716 (+) |
| G233306 | NA | other | upstream | 3295557 | 8304599 ~ 8304949 (+) |
| G233024 | NA | other | upstream | 3990613 | 7567523 ~ 7609893 (+) |
| G236874 | NA | other | downstream | 205326 | 11813688 ~ 11816475 (+) |
| CI01000054_12887165_12901376 | NA | other | downstream | 1276540 | 12886994 ~ 12902006 (+) |
