CI01000054_11633235_11635069 (PRF1.8)


Basic Information

Item Value
gene id CI01000054_11633235_11635069
gene name PRF1.8
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11632959 ~ 11635103 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11633235_11635069.mRNA
CTTTAAATACAGGTTAGAGAGACAATTTATTCCATTATTTTTGAGCATCTGAGCTGTACATTTAATAGTAGGTAACTATAAAAAAATTCAAATAATCATAGTATGTTTTGAAAGAGAATTACTGTTTAACATGCTTTTTTATTTTTGCTGTTTGTTTTAAAAATAACCATATTGCAAATTTTATGAAGGTGTTATTGTTACAATTCTAGGCTATTGTGATGTTAATTTTCACAACAATGTTGAAATTTTCTTTCTTAAATTATCTCACTACAGATCATGGGGCACTACCAGACTTACCTTGTTGTTTTCTGGGCATTGCTTCTCATAACCATTTCTGGAGAGGACGACACAGGTGCATCAAAAGAGTGTGAGGATGCTCCCTTTGTTCCAGGGTACAATCTTGCTGGAGAGGGATTTGATGTTGTGACCATGGAGCGAAAAGGATCTTACGTGATCAATATGGAGAAATGGGATTTAGGAAACGACACTTGTACATTGCACAAAAACAGTTACATGAATGGAATAAAACAGAAGCTACCAGCAGCAGTTGTAGACTGGAGGGCTTTGCCAATGTGTTCAATGAAAGTCTCCAGTCAGATCTTTGAATCAAGTGAAGCACTGGTCAATGATTCATCATCAGCACTCTCGGTCAGCTGGAAAGTTGGTTTAGATGTGAAGGCTGCTGGAGCTGCGGTCGGAAGCACTCATTCCAGGGAAGCGAAATTTGCAATGACAAAATCAAAACAAGACAAATACAGTTTCACCAAACATCAAGTTGCATGCAGCTTATACAGATATCGTGTAGCTGAAAAGCCTCCCCTTCATGCACAGTTTCTTGAAGCAATCAAATCACTCCCTGCATCCTACGATCCAGACGCCTACCGCAACCTGATCACCACATATGGCACTCACTATATCAAAGATGTCAAGTTAGGGGGGCAAATGAAAGCCATAACAGCCTTCAAAACCTGTCAGGCAACAGTGAATGGGCTTACAGACACTGCGGTAAAAGACTGTTTGGATGTAGAAGCCTCTGGTTCATACAACGTAGCAACTGTGAAGGTAGAGGCACATTTTTGTGAAGAACAGAAAAGGAAGATGGGGACAAATCAAAAGTTCAGCACCATGTTCAGTGAGCGCGAGACAGAGATTATCGGAGGAAAAATAAATGGTGAAGATCTTCTTTTTTCTGGTTCATCACATCCAAATTCCCTTAAAAACTGGCTTGAGTCTCTGAAGAGCCTCCCTGATATTGTGCATTACTCTCTGAAACCCCTCCATTCCTTACTGAGTACTGAACACCCTGCCTGGAAAGGACTGAAGAGAGCTGTTGAAAAATACATAATTGAAAATGCCCTCATGAAGGTTTGCTCTGAGCCTTGCAATATTGGCAAGAAGGGCAGTGCAAGAGACCGATGTGCTTGTGTTTGTGAAAGCAGTCAAATTATAAAGTCTAACTGTTGTCCAGCTGAAAAAGGACTTGCCACCCTGAAAGTTTACAGTCTCAGAGCCAAAGGTCTGTATGGAGATGTATTTACTCAAACAGATGGTGCTGTATCGGTCACATATGGCACGCAAATTAAGCGCACTGAGACTATTAATGATGATAACGATCCAAATTGGCCAGAAACATTTGAGTTTGGTCCTATTAAGATCAGCATGGCCAATAAACTAACTTTTGAAGTTTATGATGCAGACACCTATTGGAACAGTGATCTCCTCGGTTCATGCTCTTTTGATCTTAGAAGTGGAGTTGTGAATGACAGTTGTGTTTTTAAATATGGCACCTTCTTTTTTACCTATGAAGTGAAATGTGCTCCCAGTCTAGGGGGCCCACAGTGTAATGAACACAAACCTTCTCCAATGGCTGCCCCTCTGGCTGACATTTTCAGCTCAAGAAATGGGGTTCTGGTTAAAGACATGCCCAGACTTGAATCAGCTCACAATTTCTCAAATAAATTCAAGAGCGCTTGTGGAAAACGGATAAAGCTGTAGGATTTTAGTAGGATCTTAAATCAGGCCTTGTGCA
>TU268596
AGAGACAATTTATTCCATTATTTTTGAGCATCTGAGCTGTACATTTAATAATCATGGGGCACTACCAGACTTACCTTGTTGTTTTCTGGGCATTGCTTCTCATAACCATTTCTGGAGAGGACGACACAGGTGCATCAAAAGAGTGTGAGGATGCTCCCTTTGTTCCAGGGTACAATCTTGCTGGAGAGGGATTTGATGTTGTGACCATGGAGCGAAAAGGATCTTACGTGATCAATATGGAGAAATGGGATTTAGGAAACGACACTTGTACATTGCACAAAAACAGTTACATGAATGGAATAAAACAGAAGCTACCAGCAGCAGTTGTAGACTGGAGGGCTTTGCCAATGTGTTCAATGAAAGTCTCCAGTCAGATCTTTGAATCAAGTGAAGCACTGGTCAATGATTCATCATCAGCACTCTCGGTCAGCTGGAAAGTTGGTTTAGATGTGAAGGCTGCTGGAGCTGCGGTCGGAAGCACTCATTCCAGGGAAGCGAAATTTGCAATGACAAAATCAAAACAAGACAAATACAGTTTCACCAAACATCAAGTTGCATGCAGCTTATACAGATATCGTGTAGCTGAAAAGCCTCCCCTTCATGCACAGTTTCTTGAAGCAATCAAATCACTCCCTGCATCCTACGATCCAGACGCCTACCGCAACCTGATCACCACATATGGCACTCACTATATCAAAGATGTCAAGTTAGGGGGGCAAATGAAAGCCATAACAGCCTTCAAAACCTGTCAGGCAACAGTGAATGGG

Function

symbol description
prf1.8 Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

GO:

id name namespace
GO:0005579 membrane attack complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11633235_11635069.mRNA False 2029 mRNA 0.41 2 11632959 11635103
TU268596 True 767 TUCP 0.44 3 11632976 11634064

Neighbor

gene id symbol gene type direction distance location
CI01000054_11600741_11608257 NA coding upstream 24597 11600506 ~ 11608390 (+)
CI01000054_11564820_11568338 S100V2 coding upstream 64509 11564820 ~ 11568999 (+)
CI01000054_11536181_11537063 NA coding upstream 95795 11534757 ~ 11537164 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 219828 11409254 ~ 11413131 (+)
CI01000054_11289604_11337266 NA coding upstream 295579 11289604 ~ 11337380 (+)
CI01000054_11637464_11637950 NA coding downstream 2230 11637333 ~ 11638191 (+)
CI01000054_11648262_11648786 NA coding downstream 12856 11647959 ~ 11649495 (+)
CI01000054_11659093_11663413 THAP7 coding downstream 23990 11659093 ~ 11663607 (+)
CI01000054_11666236_11693431 NA coding downstream 31133 11666236 ~ 11693479 (+)
CI01000054_11783772_11784302 NA coding downstream 148669 11783772 ~ 11785006 (+)
G236853 NA non-coding upstream 3932 11628707 ~ 11629027 (+)
G236852 NA non-coding upstream 4443 11628286 ~ 11628516 (+)
G236851 NA non-coding upstream 10106 11622605 ~ 11622853 (+)
G236849 NA non-coding upstream 15813 11616827 ~ 11617146 (+)
G236848 NA non-coding upstream 18042 11614637 ~ 11614917 (+)
G236857 NA non-coding downstream 4801 11639904 ~ 11640550 (+)
G236924 NA non-coding downstream 61756 11696859 ~ 11697087 (+)
G236942 NA non-coding downstream 116411 11751514 ~ 11751727 (+)
G236972 NA non-coding downstream 219870 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 263127 11898230 ~ 11907383 (+)
G235560 NA other upstream 1240581 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3303371 8325126 ~ 8329716 (+)
G233306 NA other upstream 3328010 8304599 ~ 8304949 (+)
G233024 NA other upstream 4023066 7567523 ~ 7609893 (+)
G236874 NA other downstream 178585 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1249799 12886994 ~ 12902006 (+)

Expression


Co-expression Network