CI01000054_11637464_11637950


Basic Information

Item Value
gene id CI01000054_11637464_11637950
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11637333 ~ 11638191 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11637464_11637950.mRNA
GCATGAAAAGGGTTTCAGACTGATCTAGTGCAGGTGGCAGGAGGTCAGCAGGTGTTTGTTGGCCTCTGTTAACAAAAGTCACAAGAAGTTTGAAGGTTGGAGTGTTGCTCTGCTTTTGTGGCAGTGCCAACATGAGCTTGCTTGAGCTCTGTTGGGCAAGGAGTCGGAAGCTTGTACTTCACTGTATTCTTCGGGTTGAGGGTGCTGTCTTCCATGACTTCTCCCAGGGCTTGGCTGGTACCTGTGCTGTTGTCATGGTGACAGTTCTGTGCTGGTCTCTCCATGAGCTCGGCTATGGAGATGATACTCTTGATCAGCCCAGTGTGGCTGTAACTCTGGCTTGTCGTTGGTCCTCTCCTCTCATTGTCCAGTTGCGTTTGGCTCTGGTGCTGTCGGTCGTCAGCAGCCATGATGGCTTGTCAGTCTTTTGGGTCTCCCGTCTGGGAGGTTAAGCAGAGCATCTGCAACATTTTGACATACTTGTGGTGAGAGAAAGGGTGAGGAACTAATGCATGACCCTAAAGAATTCATAGGCAGTGGATGAGCTAGGAATATAACATCCAGCTTGTTGTTTCAGGCATAGCTCGCTAGTGAAGCGTGCCTTCTATGCTCACGATCTTAGCTATGGATGCTAGGATGCTAAGGTTTGCGTGGTTTTGAGAATGTTTCTTGAAAGGCATAAGCCGAGATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11637464_11637950.mRNA True 693 mRNA 0.49 3 11637333 11638191

Neighbor

gene id symbol gene type direction distance location
CI01000054_11633235_11635069 PRF1.8 coding upstream 2230 11632959 ~ 11635103 (+)
CI01000054_11600741_11608257 NA coding upstream 28971 11600506 ~ 11608390 (+)
CI01000054_11564820_11568338 S100V2 coding upstream 68883 11564820 ~ 11568999 (+)
CI01000054_11536181_11537063 NA coding upstream 100169 11534757 ~ 11537164 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 224202 11409254 ~ 11413131 (+)
CI01000054_11648262_11648786 NA coding downstream 9768 11647959 ~ 11649495 (+)
CI01000054_11659093_11663413 THAP7 coding downstream 20902 11659093 ~ 11663607 (+)
CI01000054_11666236_11693431 NA coding downstream 28045 11666236 ~ 11693479 (+)
CI01000054_11783772_11784302 NA coding downstream 145581 11783772 ~ 11785006 (+)
CI01000054_11785504_11789031 CHTOP coding downstream 147123 11785314 ~ 11789697 (+)
G236853 NA non-coding upstream 8306 11628707 ~ 11629027 (+)
G236852 NA non-coding upstream 8817 11628286 ~ 11628516 (+)
G236851 NA non-coding upstream 14480 11622605 ~ 11622853 (+)
G236849 NA non-coding upstream 20187 11616827 ~ 11617146 (+)
G236848 NA non-coding upstream 22416 11614637 ~ 11614917 (+)
G236857 NA non-coding downstream 1713 11639904 ~ 11640550 (+)
G236924 NA non-coding downstream 58668 11696859 ~ 11697087 (+)
G236942 NA non-coding downstream 113323 11751514 ~ 11751727 (+)
G236972 NA non-coding downstream 216782 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 260039 11898230 ~ 11907383 (+)
G235560 NA other upstream 1244955 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3307745 8325126 ~ 8329716 (+)
G233306 NA other upstream 3332384 8304599 ~ 8304949 (+)
G236874 NA other downstream 175497 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1246711 12886994 ~ 12902006 (+)

Expression


Co-expression Network