CI01000054_11659093_11663413 (THAP7)


Basic Information

Item Value
gene id CI01000054_11659093_11663413
gene name THAP7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11659093 ~ 11663607 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11659093_11663413.mRNA
ATGCCCAGACACTGCTCTGCTGTAGGTTGCAAGTCACGAGACACAAAAGACGTTCGGAAATCTGGAATCACTTTTCACAGGTTGCCAAAAAAGGGAAACCCTCGTCGCACAACTTGGATTATCAACTCTCATCGCAAAGGCCCAGAGGGAAAAGGCCAGTGGGACCCCCAGAGTGGTTTCATCTATTTCTGTTCTAAACACTTCACCCCTGATAGCTTTGAACTCTCTGGAGTCAGTGGCTATCGCAGACTAAAGGATGATGCAATTCCCACTGTATTCGAAATTCAGCCTCATGAAAGAGGCACTGCTGGGAAATGTGCAACAAAACGGAGAGGCAGACCTCGAAATGCGGAAAAACTTATCAGTGTCAAGAACTCCAATAATAATGAAGAGTCAGAAAGCCAAGAGATCTTCAACAGTGAGACTGTGGTGCAAAAAGTAGCAGATAATGAGTGTGAAAAAGGCGAAGGGGAGGATAAGCATGATCAGCCTCCTCCTCAGCCTTCATCTGAGGCTCCTCAAACCTCTGAAGAGACATTATTAGATGACCAACCGCCTGACCCCTCTTCTCCTCAACCTTCTCCACGTCCACCTTCTCCATCCTGCTATATGAAGCGCCTTCCCCCACCTCCTGGCTTTTACTTGCCAAAAGAACACAACTACGCTCAGCTGTGCCCTCTAGTGTGGCGAAAGCGCTACGACAAAGCCATCGACAGCTTGGAGAAAGCGCTGCGTCTTCTGAGTGCCGCCCGACGGCGGGAGAACCGGCTACGCCATGCACTGCTGCGCCTCAGAGAGAACCGACTTAGGAGTACCCTATCTCGCACGCGAGACGGGGTGAAAGGAAAGGAGGCCCGGGGAGGTAGGTTTTCAAGCTGGGCTGCTCCAAAGGGACCGGGAACGAAAGGGGAGAGAGGTTGCAATCTTGAGGGATTGGAGGAGAGTGCAAATGAAGGCACAACTGATGAAATAGATCTTCTCGCTGAGGGATGGAACGGACAGGGACAGAAAAGGGGAAAAGTCACAGCGGAAGAAGAAGAAGGATGCTGTTTTTATTGCGGAAGGGACAATGAAGGAAACAAAATAAGTGTGTACAAAGAGCCGACTGTAGGACCTGATGAGATTCAAGGATCCCAAGCAAGACATAAACCTAAGAGAATCCAGGAAGTCAAAAGGAAAGCCAAGGTGCTCAAAGAACAAAAGCCAGAGAACTCTAGGACTGACGTGGCACCTGTGGAGCAACAAAGCTACTACTTGTATTACTGTGAGAGCACAGATAATGAGGACACAATGCAGGTGGTCACCATGGAATTGCAACCGCACCAATTGAACACAGAGGAGGATGGATCTCTTGAGCTCCACAATAATACAGAAGCAATCCAGCAACTCGCTCTACTCCATCCACAGACTGACATGCACACTGCGTCTGGATCTATTCAATACTCAGCAACAATACAGGAAACGTCTACGCCATTCCATCTGCAGCAAATCCAGGTGCTTCAGCCACATCAACAACTTCTTCTCCCTGACCTTGCCACAAAGGAAAAGAGTGAAACGGAAATCGAGCAGGGAGGGGGACAGCAGTTCTACTGGATACAGGAAAAAGCTGATGATCATGTCCTACTGATGCCAGTTGCTACCGAAACGGGGGAAAGGAACAGAGTCGATGTTGAGACTGTGATTGAGACAGTGCAGCCTCAGGCAATGTTGGATAGATTTCAGTCAAAGGCCACTGAAGAAAGGGATGGACTGACTGTGAAGTGTGATTCCATGACACTGACGTCTACGGGGTGGGAAAACGGTCAGCTCACACACCAGACGGACCTGAGGCCCACAGCAGTGGGGGGAGATGTCAGAGAGAGACTGAAGGAACATTTAGAGGGGTTTCAGCTTCAGCTTAGCAGCGAGTTTATTGACTGAACTGCTCAACATGATACGTCTCTGTTATATTATTATCTAATGGTTTTATTCTCCACTTACAGAACATGCACAAACTCTTCAGTTAACTTTAGCTAAGCTATATGGAAGACATCAGCATCATTTTCATATTTTGGCAGATTATTGTTTAATAGAAATTCAATATGTTGGTATTTTAATTGGAAAGCCGTAATTCA

Function

symbol description
thap7 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human THAP7 (THAP domain containing 7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11659093_11663413.mRNA True 2114 mRNA 0.48 4 11659093 11663607

Neighbor

gene id symbol gene type direction distance location
CI01000054_11648262_11648786 NA coding upstream 9598 11647959 ~ 11649495 (+)
CI01000054_11637464_11637950 NA coding upstream 20902 11637333 ~ 11638191 (+)
CI01000054_11633235_11635069 PRF1.8 coding upstream 23990 11632959 ~ 11635103 (+)
CI01000054_11600741_11608257 NA coding upstream 50731 11600506 ~ 11608390 (+)
CI01000054_11564820_11568338 S100V2 coding upstream 90643 11564820 ~ 11568999 (+)
CI01000054_11666236_11693431 NA coding downstream 2629 11666236 ~ 11693479 (+)
CI01000054_11783772_11784302 NA coding downstream 120165 11783772 ~ 11785006 (+)
CI01000054_11785504_11789031 CHTOP coding downstream 121707 11785314 ~ 11789697 (+)
CI01000054_11793688_11807158 NA coding downstream 130081 11793688 ~ 11807377 (+)
CI01000054_11911995_11913792 NA coding downstream 247528 11911135 ~ 11913857 (+)
G236857 NA non-coding upstream 18543 11639904 ~ 11640550 (+)
G236853 NA non-coding upstream 30066 11628707 ~ 11629027 (+)
G236852 NA non-coding upstream 30577 11628286 ~ 11628516 (+)
G236851 NA non-coding upstream 36240 11622605 ~ 11622853 (+)
G236849 NA non-coding upstream 41947 11616827 ~ 11617146 (+)
G236924 NA non-coding downstream 33252 11696859 ~ 11697087 (+)
G236942 NA non-coding downstream 87907 11751514 ~ 11751727 (+)
G236972 NA non-coding downstream 191366 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 234623 11898230 ~ 11907383 (+)
G236895 NA non-coding downstream 293465 11957072 ~ 11958097 (+)
G235560 NA other upstream 1266715 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3329505 8325126 ~ 8329716 (+)
G236874 NA other downstream 150081 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1221295 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014783 thap7 coding NC_007130.7 CM002903.2 24126775 ~ 24136233 (-)