CI01000054_11666236_11693431


Basic Information

Item Value
gene id CI01000054_11666236_11693431
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11666236 ~ 11693479 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11666236_11693431.mRNA
ATGTTCAACACCTGCACACTGTGGGTCTCTACCAACACTGTTCCAGCCTACCCACCAATGGTTGTTCAAGTGAAACAACGCATTCGCTACAGCAGCAAAACAATGGAAGGCAACCAGCAGAAAGTGGAGGCCAACATTTTGTTACTGGGAGCTGAGAACGTTGGAAAGTCTGCCCTCACCGTGCGCTTTCTAACGAGGCGATTCATTGGAGAATATGGAGATATAGGTAAACAGATCAGCCTACTTGATTATCCCTTGCTTGTCTTGATCCCCATTGTGATTTGCAGTAAAATAGTCTTCGTTTTGCTTAACGAGGAGTCAGGATACATCAGCGACAGACAGCTGCAGTGGGCGGACGGCTACATCCTTGTTTACAGCATCTGTGACCGCGCCAGCTTTAATGTGGTGCGGCAACAAGTGCAGTGCATACGACAAGCCAAGCAAAAACTGGCCAGCACAGCTCAGATCATAATCGTGGGGAATAAGAGAGACCTCCAGCACCGACGTACAGTGTCAAGTGAGGAGGGCCGGCTGCTGGCGCTCTCGGCGGACTGTGGGTTTTTTGAGGTCTCTGCTGCTGAGACATACCACGGAGTGCTGATGGTGTTTCACGAACTGTTTGAGCTCATACGAGAGGCAAGGGCACTCAAGAAGGGCACCGCAGGCTTCAAAGCGCTGAGCCTCAGACCTCACGTAGGCAAAGCCAGGCTTTCATATCGTGCAGTAGATCATTCTTCACCCTACACAGACCTCAAAGAAGGCTATGTTGTTTATCAAGATTAGTGACAAAGGCCAGCTGGATGTACACAACACTGGAGCATCCATTGAAAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11666236_11693431.mRNA True 831 mRNA 0.50 4 11666236 11693479

Neighbor

gene id symbol gene type direction distance location
CI01000054_11659093_11663413 THAP7 coding upstream 2629 11659093 ~ 11663607 (+)
CI01000054_11648262_11648786 NA coding upstream 16741 11647959 ~ 11649495 (+)
CI01000054_11637464_11637950 NA coding upstream 28045 11637333 ~ 11638191 (+)
CI01000054_11633235_11635069 PRF1.8 coding upstream 31133 11632959 ~ 11635103 (+)
CI01000054_11600741_11608257 NA coding upstream 57874 11600506 ~ 11608390 (+)
CI01000054_11783772_11784302 NA coding downstream 90293 11783772 ~ 11785006 (+)
CI01000054_11785504_11789031 CHTOP coding downstream 91835 11785314 ~ 11789697 (+)
CI01000054_11793688_11807158 NA coding downstream 100209 11793688 ~ 11807377 (+)
CI01000054_11911995_11913792 NA coding downstream 217656 11911135 ~ 11913857 (+)
CI01000054_11984922_12021876 FCHSD2 coding downstream 291443 11984922 ~ 12021945 (+)
G236857 NA non-coding upstream 25686 11639904 ~ 11640550 (+)
G236853 NA non-coding upstream 37209 11628707 ~ 11629027 (+)
G236852 NA non-coding upstream 37720 11628286 ~ 11628516 (+)
G236851 NA non-coding upstream 43383 11622605 ~ 11622853 (+)
G236849 NA non-coding upstream 49090 11616827 ~ 11617146 (+)
G236924 NA non-coding downstream 3380 11696859 ~ 11697087 (+)
G236942 NA non-coding downstream 58035 11751514 ~ 11751727 (+)
G236972 NA non-coding downstream 161494 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 204751 11898230 ~ 11907383 (+)
G236895 NA non-coding downstream 263593 11957072 ~ 11958097 (+)
CI01000054_11564820_11568338 S100V2 other upstream 97237 11564820 ~ 11568999 (+)
G235560 NA other upstream 1273858 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3336648 8325126 ~ 8329716 (+)
G236874 NA other downstream 120209 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1191423 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014782 zgc:64022 coding NC_007130.7 CM002903.2 24123409 ~ 24125457 (-)