CI01000054_11724484_11731711 (SYT11A)


Basic Information

Item Value
gene id CI01000054_11724484_11731711
gene name SYT11A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11723995 ~ 11731711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11724484_11731711.mRNA
ATGTGTCCCCAGTGCTCGCGGGTTTTCTGGGTGCAGGGGTCTTGGTTGTCTCCGTGACAGTGGCCGTTTTCCTCTGGACGTGCTGTCAGCGGCGATATCGTCAAATGACAGGTGCGTACAAGCTGACCAGCGGCCCCTACGACCCTCCCGTTGACCCCCCCTACAAGTTCATCCACATGCTCAAAGGCATCAGCATCTACCCCGAGACCCTCAGCAACAGCAAGAAGATTGTACGGGTGGGCCAGCGCTCAGGATCGAGTTCCTTGTTAAGAGAATGGAGTCGTGGGTCCCGAAACGGTGACGTGCTCCTTGTGGATGCAGATCCCGAAGGTGGTACTGCGCACCTACAGATGAACCACCTGGTCCCCCCTGTGGGTCCTCCCAGACTGGAGAGGGCGCTGCCCATCCGGGCGGACTACTGCTGTATGGAGAGCAGCTCAGGAAGCAGCAGTGAAGCACCCAGTAAAACAGCATCACCCTACAGTCTCAACTCACCCTCTCTGGGAACGCTCAGTCTGGCCATTGACTACAACTTCCCCAAGAAGGCCCTCGTTGTCACTATCGTAGGAGCGCAGGGGCTCCCCGCAGTGGACGAACAGGCGGGCAGTTCTGACCCCTACGTGAAGATGACCATCCTACCCGAGAAGAAGCACCGAGTGAAGACACGCGTACTGAGGAAGACTCTGGAGCCTGTGTTTGACGAGACGTTCACCTTCTATGGCATCCCGTACAGCTCGCTGCCTGAGCTTACCCTGCACTTCCTGGTGCTCAGCTTTGATCGCTTTGCACGGGATGATGTCATTGGGGAGGCGGTCGTGCCATTAGCAGGTGTGGACCCAAGCACGGGACGGGCGCACATCACCCAGCAAATCAGCAAGAGGAACACACAGGTTGTCAGAGATGTATCATATGGGACAGGTAGGGACCCCATGCATACTGAAAGGAAAGCCCCTATACCTCCCAATGCTCCTGAAGTGTTGAAGGGCCCTGACTTTGCTAAGTGGCAGAAGTGTGAAAGTCGTGGAGAATTGCTGGTCTCACTGTCCTACCAGCCTGTTACTCACAGGCTAAATGTGGTGGTCCTCAAAGCCAAACACCTGCCAACCATGGACATCAGTGGTCTGTCAGGCAACCCTTATGTTAAAGTGAACGTCTTCTATGGCCGCAAGCGCATAGCCAAGAAGAAGACGCATGTTAAGAAATGCACACTCAATCCTGTTTTCAACGAATCGTTTATCTACGATGTTCCCGCTGAGCTTATGCCGGACATCTCTGTGGAGTTTCTGGTCATCGATTTTGACCGCACCACGAAGAATGAGGTTGTGGGTCGCCTGGTTCTAGGTGGTCAGAGCCCCATTCCGTCAGGGGTGACTCACTGGAGGGAAGTCTGTGACAACCCAAGGCGGCAGATTGCCAAGTGGCATAACCTTACAGAGTACTAGTATCTGGCTTAAACATGGGGAAAGCAAAGTGTATTATACCACTTCCTTCCTGTCAGGCCCTCTATCGAAAGAAGCCCATTTATAATCTCTCATTTTCCCTGTACAGATAGATGTATGAGTGAACGAGTACAAAGGACCAGGAGCAGTCTAACGGAACCACTTAAAAAGTTCTCTAAGGAACTAATAGCAAAAAAGTCTCATTCGTCCTAGCAAAAAAAAGAAAAGAAAAAAAAAAGTTAATTATGGCTCTGAATTATACCTGTATGAGAGTTATACCACAGTATCCACAGAGCCTTTCACCAGTATACCGGCATATTCACAATATACATACACTACTTTCAATTAGCCGCATGCTAATAATGAGATAATGAGACACTTTTATATTTAGGATAAAGGAGGGCTGTAAGAAAAAGTGAGCTTCAAGCCCACTTTTGAGGAAAATAATAGACTGAATTTTTCATAGTAAATACGGATGAATGGTGAAATAAA

Function

symbol description
syt11a Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human SYT11 (synaptotagmin 11).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K19911 SYT11; synaptotagmin-11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11724484_11731711.mRNA True 1931 mRNA 0.50 4 11723995 11731711

Neighbor

gene id symbol gene type direction distance location
CI01000054_11705281_11711296 RIT1 coding downstream 12699 11704581 ~ 11711296 (-)
CI01000054_11699420_11703409 PEX11B coding downstream 20263 11698966 ~ 11703732 (-)
CI01000054_11594619_11599264 NA coding downstream 124698 11594586 ~ 11599297 (-)
CI01000054_11480381_11493272 SEMA4AB coding downstream 230723 11478784 ~ 11493272 (-)
CI01000054_11464968_11474671 NA coding downstream 249293 11464394 ~ 11474702 (-)
CI01000054_11758803_11774872 NA coding upstream 26586 11758297 ~ 11774872 (-)
CI01000054_11780397_11781842 SNAPIN coding upstream 48464 11778890 ~ 11781880 (-)
CI01000054_11815575_11845247 EEPD1 coding upstream 83586 11815297 ~ 11846146 (-)
CI01000054_11873443_11903635 SEPT7 coding upstream 141287 11872998 ~ 11904256 (-)
CI01000054_11964578_11981248 NA coding upstream 232666 11964377 ~ 11981319 (-)
G237125 NA non-coding downstream 109088 11614543 ~ 11614907 (-)
G236815 NA non-coding downstream 145297 11578372 ~ 11578698 (-)
G236810 NA non-coding downstream 164358 11559391 ~ 11559637 (-)
G236808 NA non-coding downstream 178573 11545194 ~ 11545422 (-)
G236807 NA non-coding downstream 180457 11543254 ~ 11543538 (-)
G237079 NA non-coding upstream 50889 11782600 ~ 11789638 (-)
G237087 NA non-coding upstream 177722 11909433 ~ 11911150 (-)
G237101 NA non-coding upstream 225349 11957060 ~ 11958114 (-)
G237179 NA non-coding upstream 237198 11968909 ~ 11969500 (-)
G236748 NA other downstream 428211 11285194 ~ 11295784 (-)
CI01000054_10872970_10881017 SDHAF3 other downstream 842779 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 other downstream 904650 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1856783 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 2238608 9483147 ~ 9484282 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014058 syt11a coding NC_007130.7 CM002903.2 23982466 ~ 24034710 (+)