CI01000054_11785504_11789031 (CHTOP)


Basic Information

Item Value
gene id CI01000054_11785504_11789031
gene name CHTOP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11785314 ~ 11789697 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11785504_11789031.mRNA
AAATAAAAGCACGTGTGGTCTAAAAAGGGCATTCACTAGATTGCTACACGATCCGCTGTAGCTGCGTCCATGCTGTGTGAAATGATTTGATTTGGAATCCTCCTTTCCTCGTATCCCCCTTTCCCTCCTCTTTTTCTCTCTCTCTCTCTCTACCCTCCTTCTTCTGTTGTATCCCACAAGCTTCACAAACATGCTGAAGAACAAGCAGCCGACAGTGAGTAGCATCCGGGCGACCATGCAGCAGCAGCACATGGCCAGTGCACGCAACCGCCGGCTCGCTCAGCAGATGGAGAACAGGCCCTCTGTGCAGGCTGCCCTGCAACACAAACAGAGCCTGAAGCAGCGACTTGGGAAGAGCAACATCCAGGCCAGACTGGGTCGGCCCATCGGCTCATTGATGCCGGGCGGCGGCAGAGGACGAGGTTTTCCCGGAGGATTGCGTGGAGCTGGACGAGGACTGCGAGGAAGAGCGAGAGGCGGTCCCATGAGAGGATCACTCTCTCTTAGAGGTGCAGGTCAGATGAGAGGTAGGGGTGGTCCTGGACGTATCGGTCTCCGTCGAGGCATGCGTCAGCGTGGAGGAGCTACAGGACGAGGAGCTTTGGGTGGCCGAGGTGCAGCACGTGGAGCAGCTGGAGGAAGAGGCCGTGGAGGTCTGAGAGGTCGAGGAGGGTTTGCTGGAAGAGGTCGTGGACGCGGCAGAGGCCGAGGAGCAGGTCGTCCCATCGTCACACGTGAGCAGTTGGACAACCAGCTTGATGCTTACATGTCCAAGACCAAGGGGCATCTGGATGCCGAGTTGGATGCTTATATGGCCCAGGCAGACCCCGAGAGCATGGAGTAACCGCAGCTGAGCTGAGAGAGGGCAGCTCCCCTAAAGATCTGCAGATAATAGACTGAGTGACAACAGACAGAACCATTAAAGCTGTTGCTCTTGGACACTCCCTGATGAGACACTTAAACTTGAAGTTTGTACAAAGTTATGTATCCATCCTAGTTATGTTCAAACATCTGTGAGTCGCTGCTACTCGCACTTCCTAAACTGAATATTGTACCATCGTAAAGCCTCACAACAAGTTGGTGTGGTTCTAAAAGGTCCTCTTAGAAAAGTTTTGGCCGTAAAGTGAAGGGGAAAAAAAATTCCATTGAACTATAATAATAGAGATTGTACTTGATATGATATTTGTTGGCCGAAATTCTGAAAATGACACAATGAATGAGGAACTGTGAACTCTAAGCAGTGACATTTGATCATCCGGTGATAAAACATGGTTTATATGGATGAACTGATATTAATTACAGTAATGTTCTGCAAATGTCCTTTACCTTTTATTATTGTATTTTTATTATGTTTTAAAAATTAGAACTTTTACTCCGTATACGCAATCTTGATATGTCATTTTTTTTGTCAATGTCATAAAAGATGTTTTAAAAGTATATTGTAACCAACAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTTCGGCTTTAA

Function

symbol description
chtop Enables methyl-CpG binding activity. Involved in several processes, including mRNA export from nucleus; positive regulation of ATPase activity; and positive regulation of helicase activity. Located in cytoplasmic ribonucleoprotein granule and nuclear speck. Part of transcription export complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11785504_11789031.mRNA True 1510 mRNA 0.47 4 11785314 11789697

Neighbor

gene id symbol gene type direction distance location
CI01000054_11783772_11784302 NA coding upstream 308 11783772 ~ 11785006 (+)
CI01000054_11666236_11693431 NA coding upstream 91835 11666236 ~ 11693479 (+)
CI01000054_11659093_11663413 THAP7 coding upstream 121707 11659093 ~ 11663607 (+)
CI01000054_11648262_11648786 NA coding upstream 135819 11647959 ~ 11649495 (+)
CI01000054_11637464_11637950 NA coding upstream 147123 11637333 ~ 11638191 (+)
CI01000054_11793688_11807158 NA coding downstream 3991 11793688 ~ 11807377 (+)
CI01000054_11911995_11913792 NA coding downstream 121438 11911135 ~ 11913857 (+)
CI01000054_11984922_12021876 FCHSD2 coding downstream 195225 11984922 ~ 12021945 (+)
CI01000054_12030200_12039539 NA coding downstream 240503 12030200 ~ 12039539 (+)
CI01000054_12039863_12047999 RPS3.L, RPS3, RPS3.S coding downstream 250166 12039863 ~ 12047999 (+)
G236942 NA non-coding upstream 33587 11751514 ~ 11751727 (+)
G236924 NA non-coding upstream 88227 11696859 ~ 11697087 (+)
G236857 NA non-coding upstream 144764 11639904 ~ 11640550 (+)
G236853 NA non-coding upstream 156287 11628707 ~ 11629027 (+)
G236852 NA non-coding upstream 156798 11628286 ~ 11628516 (+)
G236972 NA non-coding downstream 65276 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 108533 11898230 ~ 11907383 (+)
G236895 NA non-coding downstream 167375 11957072 ~ 11958097 (+)
G236888 NA non-coding downstream 168593 11958290 ~ 11968299 (+)
G236887 NA non-coding downstream 321932 12111629 ~ 12170392 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 151250 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 216315 11564820 ~ 11568999 (+)
G235560 NA other upstream 1392936 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3455726 8325126 ~ 8329716 (+)
G236874 NA other downstream 23991 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1095205 12886994 ~ 12902006 (+)

Expression


Co-expression Network