CI01000054_11911995_11913792


Basic Information

Item Value
gene id CI01000054_11911995_11913792
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11911135 ~ 11913857 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11911995_11913792.mRNA
GCATATAAAGACTTCCTCGTTCTTATGTGGGCATCCATTCACAACATTTAACCCTTTTAGTAGCAGAGAAGAATTTTTGTCACTTTCAGTCCACTGATAAACAATTATTTTGAATTACACAGTGCTGATAATATCTAATTTTGTTTTCATGAGTTTTGGCACATGGCAACTTCATTTGGATTTCGAGGGGTTTAATTAAACGAGACAAATCTTGTGTCATTATAAGTAGGCTATAAAGCAGTTTGAGATCAGGCCATTTCAAGAGTGCGTCTAATATGTGATGGTAAATATATTGCTTACATTTAGAATTGCTTAAATACTGGCGTTCATCGTTAATAATTTGCCGTATCATTGTTTTTGTCAAACGCGCGTCAAAAAAAAAAAAAAAAAATCAACTGGCATTAGGACCCTGCATGTAATGAGCGTATCGTGACGTACTGCAACACGGAAGTACTGTTATGAGCATTAGCCAACTGTAGCAGAGAGGATCACTGCGGCATTAAAATGTTTTACAGCACTCTATTAATCTTTGCACAGATCACAAAACAGAAGATATCGATCGTCTAATATGGACCCACGCTGAGGAACCGTTCCCATCGATTTAGCAAGTATTTATTTCCTGGAAAAGGGAAGCACTTGAATGAATTAGATCTAATGAGACAGTGGATGGTGACTGGGACAATGAAAGTACATTTACTGTCGTTGTTTAGAATATATATCCAGTAATCATTAGGAAATTACATTTTAATATGTGGACGAAATAGTAAAATAGTAATGATTTATGTTTCATTAAATTAGTGGGCTAGTAATTGCATTCAGTTGATTTAACCATAAAGGACAGATAGATACATCACTCAAAGATGGATGAAGTGATTATGGATCAGATCATGTATGTTGTTCATCAAGTGGTGTCTTGGATCGCATCTTTTGCCATCATATTTGGAGGAGTTGTGCCATACATCCCTCAGTACAGGGATATCCGCAGGACTCAGAATGCTGAAGGATTCTCCACATATGTTTGCCTGGTTCTGCTGGTAGCCAACATATTAAGAATACTATTTAGGTTTGGACGTTACTTTGAGACTCCGCTGCTTTGGCAGAGTATAATCATGATCATTACAATGTTAATCATGCTGAACCTGTGCACCAACGTCCGCATGGCCACTGACCTCAACACCAAACGCCGCTCGTTCACAGGCTCAGGGTCTGTCTTTGAACATGTTTCACAAGATTATCATACAAGGAGGGCCTTTGAAGGGGACGAACTTTGACCGGATGGCTGTTTGGTGAACATCAGTCTCAGGTTTATTTATACTTGAGGTGTGTTACAAAGTTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11911995_11913792.mRNA True 1336 mRNA 0.38 3 11911135 11913857

Neighbor

gene id symbol gene type direction distance location
CI01000054_11793688_11807158 NA coding upstream 103758 11793688 ~ 11807377 (+)
CI01000054_11785504_11789031 CHTOP coding upstream 121438 11785314 ~ 11789697 (+)
CI01000054_11783772_11784302 NA coding upstream 126129 11783772 ~ 11785006 (+)
CI01000054_11666236_11693431 NA coding upstream 217656 11666236 ~ 11693479 (+)
CI01000054_11659093_11663413 THAP7 coding upstream 247528 11659093 ~ 11663607 (+)
CI01000054_11984922_12021876 FCHSD2 coding downstream 71065 11984922 ~ 12021945 (+)
CI01000054_12030200_12039539 NA coding downstream 116343 12030200 ~ 12039539 (+)
CI01000054_12039863_12047999 RPS3.L, RPS3, RPS3.S coding downstream 126006 12039863 ~ 12047999 (+)
CI01000054_12049115_12062566 KCTD14 coding downstream 135258 12049115 ~ 12062566 (+)
CI01000054_12064156_12077740 INTS4 coding downstream 149922 12063779 ~ 12077848 (+)
G236886 NA non-coding upstream 3752 11898230 ~ 11907383 (+)
G236972 NA non-coding upstream 55372 11854973 ~ 11855763 (+)
G236942 NA non-coding upstream 159408 11751514 ~ 11751727 (+)
G236924 NA non-coding upstream 214048 11696859 ~ 11697087 (+)
G236857 NA non-coding upstream 270585 11639904 ~ 11640550 (+)
G236895 NA non-coding downstream 43215 11957072 ~ 11958097 (+)
G236888 NA non-coding downstream 44433 11958290 ~ 11968299 (+)
G236887 NA non-coding downstream 197772 12111629 ~ 12170392 (+)
G237015 NA non-coding downstream 310739 12224596 ~ 12225316 (+)
G237016 NA non-coding downstream 311819 12225676 ~ 12226328 (+)
G236874 NA other upstream 94660 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 262110 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 277071 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 342136 11564820 ~ 11568999 (+)
G235560 NA other upstream 1518757 10388136 ~ 10392378 (+)
CI01000054_12887165_12901376 NA other downstream 971045 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013923 SLC66A2 coding NC_007130.7 CM002903.2 11432330 ~ 11490549 (+)