CI01000054_12064156_12077740 (INTS4)


Basic Information

Item Value
gene id CI01000054_12064156_12077740
gene name INTS4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12063779 ~ 12077848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12064156_12077740.mRNA
TTTTAAAAACAGATATTTAATTCTTTAATCAGTCTCTATATGTAGCTTTTCTAGAAAAATAAAACACAGAAACAACTGAAAGTTCAAGCTCAGGGAAAAAATATAATGAATATGTATATTGTTGTCATTTTTACTTATATCAGAATAGGCTGTTTATAATTGTAATACAATATAATATGGAATTAAATGTATTATGCATGAGGCATTGAATACATACAGATAATTTTACAATTAAAAGGAAAAGCCCTCGATCACAGAACTGTCCTAGTGTGATTTTTGGAGACTTCCGTCCATGTGGCGTCGCTGTTCCACCTCAAAGTTCTGAGGCCACTGAATAGGGCGTGCGTGAAGAAGTGCAGGAGCGGATAAACACCGCTATGGCCGCTCATCTGAAAAAACGAGTTTATGAGGAATTCTCTAAAGTTTCTCAGCAGGTGTCTCTTGAGGAGGTTCCTACGAAGAAACTTCGACTGACCAAACCCAGTAAATCAGCCGCTCTTCACATTGACCTGTGTAAAGCCAGCAACCCCACAGACGCTCTGCAGTACCTGCTGAGTTTTGCACGAAAGCCCGTAGAGGCCGAGAGTGTGGAAGGAGTTGTGCGCATACTGCTCGAGCATTATTACAAGGAGTCCGATAACTCGGTCAGGCTGAAGATCGCCTCTCTGCTGGGTTTATTATCAAAAACCCAAGGCTTCGCTCCAGACTGCATAGTAGACGACGCTATAAACACTCTCAACAATGAAAAGTCTCATCAGGTTCTGGCGCAGCTGCTGGACACGCTACTGATCATTGGTACTCAACTCCCAGACAAGATCGCTGTCATTCAGAGACTTATAGATGTGGCCTGCAAGCTCTTGGGCTGTCTGGGGACGGTTGATAAGCCTCTCAGTAAAGAGACTGATGCCGGACCAGGAGCACAAACGTCACCCATACGGGATGTACAGAGTTTGATCAGCGACTATTTTCAGGACCAGGACCCTCGTGTCCGCACTGCCGCCATCAAAGCCATGCTGCAACTACATGAAAGAGGGATGAAAATTCAACAGACTATTTATAACCAGGCCTGTAAGCTCTTGAGTGATGATTATGAGCAGGTTCGCTCAGCAGCGGTTCAGATGGTTTGGGTTCTGAGCCAGCTTTATCCTGAGAGTATTGTTCCCATCCCCTCCTCCAATGAGGAGATCCGACTGGTGGACGACTCCTTCGGGAAGATCTGTCACATGGTCAGTGATGGCTCGTGGGTAGTCAGAGTGCAAGCTGCAAAACTGCTGGGCTCAATGCACCAAGTCAGCCCTCATTTTCTGGAGCAGACTTTGGACAAGAAGCTGATGTCAGATCTCAGGAGGAAACGTACTGCTCATGAGCGAGCAAAAGAGCTGTACGCTTCTGGAGAGTTCTCGTCTGGACGGCGATGGGCCGACGACGCTCCCAAAGAGAAAGTCGACACTACCGGTGTAAACCTCATCGACTCTGGAGCCTGTGGGGCGTTTGTTCACGGGCTGGAAGACGAGATGTACGAGGTGCGTATCGCTGCGGTAGAGGCGCTCTGTTCCCTTGCCCAGTCGTCACCAAGCTTTGCTGAAAAATGTCTTGACTTCCTGGTGGACATGTTTAATGATGAAATCGAGGAGGTGCGGCTGCAGTCCATCCATGTGTTGCGGCAGATCTCAACTCACATCACCCTCAGAGAAGACCAGCTGGACACTGTCCTTGCAGTACTGGAGGACTCATCGCGGGACATTCGCGAGGCCCTGCATGAGTTGCTGTGTTACACTAATGTGTCCACTAAAGAGTGCATCCAGCTGGCCCTCCTGGAACTCCTGAAGAACCTCACCAAGTACCCAACTGACCGCAACTCAGTCTGGAAATGTTTGAAGTTTCTTGGTGCTCGACACCCAACCCTAGTGCTGCCGATTGTCCCTGAGCTACTAAGCACACATCCGTATTTTGACACTCCAGAACCAGATATGGACGACCCTGCCTACATCGCTGTTTTAGTTCTGGTCTTCAACGCAGCCAAATCCTGTCCCACCATGCCAGCTCTATTCTCAGATCACACGTTCCGGCACTACGCCTACCTGCGTGACAGCTTGTCCCACCTGGTTCCACACCTCCGATTGCCAGGCAGAAAGCAGACTGCTAGTTCAGGTCTGGAGGCATCTGGTGTGGGTTCAGGCAGTCTGATTTCAGCACAGAACTTCCTTCAGGACAGTCTCATTCGGGTCAGCGCCCTTCAGAACCTGGAAACACCTGGTGCTCAGGATCTGCTGGAGTTTACCATCAGAGATCTGCAGCGGTTGGGGGAGCTGCAGACTGAGTTGGCTGGTTCTGCAGATTTCTGTGCCACATATCTGCGCTGCCAACTACTGCTTACCAAGGCACTTCAGGAGAAGTTATGGACCATGGCTGTTCCGCTCTGTCTTAAACAGAACGCCAAAGTTTCAACAGCCGCTCGACAGATCCTGGATGAGACCTATAAGCTGGAGTTCTTGTACAGTGGTCTGGAGACGCAGCAGATTGCTACTATTCACAACGTCCGACTGCAGGCAAAAGCGTTACAGCTCATCCTAACGGCACGATCCAAACGAGGAGTTGATCGTGTTATTGGCATTTGTGAGAAGTTCCTGCAGGATGTGGAGTCATTTCAAAGGCTCTTCATGACAGAGTTGCCTCATTTCCAGGACAGTTTTGTGGAGAAACTCCTGGAGTTGATGCCCAGGCTGACAGCCTGCAAACCTCTTGATCTGGTTAAAATCTTTCAGACCACACTGCGGCAAAGCAGATTTATCCATCTCAAACTACCCGAGCAGATCCACAGGGCGTCAGCAACAATTATTGAGCCGACAGGAGAATCAGACAACCCTTTGAGATTCACCTCCGGTCTGGTGGTGGCGTTAGATATAGATGCTACTCTTGAACATATACAAGACCCACAGACAACAGTCAAAGTGCAGGTGCTGTATCCAGATGGACAGTCTCACATAATCCACCCCAAACCTGGAGATTTCAGGACCCCAGGACCCGGACGTGTGCGACTGATCACACAGGTTTATCTCTCTCATTCTGCCTGGACAGAGCCCTGTCAGATTGAAGTGCGGTTGCTTCTGGCCTACAGCACCAGCAGCTGTAAACTATCTGTCTCTAAACCTGCATGGAACGAAAGTATGGACGGTCTCCCCACCAGTGAGAGCTCGATTGAAGGCACAATCCACCTCAGCAAACCTGTTAAAGTATTCATTATGCCCAAACCAGCTCGTCGCTGACCCATGTACAGAGGAATTCAGGCTCTTTCTGTGTGTTTGTGTGTCTGAGTGTGTGAAATTAACAGCCAACACAAAATCAAATGTTTTCATTATTATGTTTTATCTTAA

Function

symbol description
ints4 Predicted to be involved in snRNA processing. Predicted to be part of integrator complex. Orthologous to human INTS4 (integrator complex subunit 4).

GO:

id name namespace
GO:0016180 snRNA processing biological_process

KEGG:

id description
K13141 INTS4; integrator complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12064156_12077740.mRNA True 3374 mRNA 0.49 23 12063779 12077848

Neighbor

gene id symbol gene type direction distance location
CI01000054_12049115_12062566 KCTD14 coding upstream 1213 12049115 ~ 12062566 (+)
CI01000054_12039863_12047999 RPS3.L, RPS3, RPS3.S coding upstream 15780 12039863 ~ 12047999 (+)
CI01000054_12030200_12039539 NA coding upstream 24240 12030200 ~ 12039539 (+)
CI01000054_11984922_12021876 FCHSD2 coding upstream 41834 11984922 ~ 12021945 (+)
CI01000054_11911995_11913792 NA coding upstream 149922 11911135 ~ 11913857 (+)
CI01000054_12081184_12095030 NA coding downstream 2900 12080748 ~ 12095500 (+)
CI01000054_12097635_12100640 CLNS1A coding downstream 19588 12097436 ~ 12100640 (+)
CI01000054_12142398_12166344 PAK1 coding downstream 64550 12142398 ~ 12166999 (+)
CI01000054_12191048_12211237 GDPD4A, GDPD4 coding downstream 111674 12189522 ~ 12211237 (+)
CI01000054_12296634_12299462 NA coding downstream 218786 12296634 ~ 12299548 (+)
G236888 NA non-coding upstream 95480 11958290 ~ 11968299 (+)
G236895 NA non-coding upstream 105682 11957072 ~ 11958097 (+)
G236886 NA non-coding upstream 156396 11898230 ~ 11907383 (+)
G236972 NA non-coding upstream 208016 11854973 ~ 11855763 (+)
G236942 NA non-coding upstream 312052 11751514 ~ 11751727 (+)
G236887 NA non-coding downstream 33781 12111629 ~ 12170392 (+)
G237015 NA non-coding downstream 146748 12224596 ~ 12225316 (+)
G237016 NA non-coding downstream 147828 12225676 ~ 12226328 (+)
G236879 NA non-coding downstream 231607 12309455 ~ 12310013 (+)
CI01000054_12318711_12319755 SERP2, SERP1, SERP1.S non-coding downstream 240464 12318312 ~ 12320602 (+)
G236874 NA other upstream 247304 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 414754 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 429715 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 494780 11564820 ~ 11568999 (+)
G235560 NA other upstream 1671401 10388136 ~ 10392378 (+)
CI01000054_12887165_12901376 NA other downstream 807054 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012521 ints4 coding NC_007129.7 CM002902.2 3064237 ~ 3095002 (+)
bowfin (Amia calva) AMCG00016357 ints4 coding CM030122.1 CM030122.1 17251550 ~ 17263292 (+)