CI01000054_12081184_12095030


Basic Information

Item Value
gene id CI01000054_12081184_12095030
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12080748 ~ 12095500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12081184_12095030.mRNA
TTATAAATAGAGACGTGTCAGTGAAACAAGTGTGACATGTTAAAGCAGCACTTATATTATCAGAATGAATAAATATGATTTTCTGTTCTAAGAACCCCCCCCCAATATTCCCTTTTTACATTTAAATAGTATATATAAATGTATTTAACTATTCATTCCGGTCATGAATAAACACAAACACGACACTCTTTCCATTAGGAAAGTGTCAGTGGGGAAAAAAAAGTGTGGCGTCATCTTCATCACAATAACACTTTTATGCGTTATTGTGATGAAGATGATGACGATGATGTTGGTGGCATTGTGGTGGTCCACATACACACACAAACACACATACACACACTAGATGCCCCTCTGGATGATGCTCTGGGTGGGTGTCGCGGTGTATTGTGGGCAGTTTTGGGTCTAAGCAGAGCATAGCTCGTCATCTGTAGGAAAGATGGCTGCTCCGGGCACCACAGCAGCTCTTCCTCCAGCGCTCAGTCCAGGTTTTGCGGTGGTCTGCTCTTTTTTGGAGCGCTACGGGTCTGTTCTGGATCTGCCCGAGCTGACGTTTCCTCAGCTGGAGCGATACTTACAAGAGACATCAGCGGTTCCTCTGCCATTGATTGAGCTCCATGTCAAACTACTGCGGAAGATTGGCAAAACAGTCACACCAGACAGATGGGAGAAGTATCTTGTAAAGGTGTGCCAGGAGTTTAACAGCACCTGGGCATGGGAAATGGAGAGAAAAAGCTACTTAGAAATGACAGTTGAGTGTAAGACTGGCATTTTAAAGTACTTGTGTGAGTGCCAGTTTGATGACAATCTCAAGTTTAAGACATTAATCAACGAGGAAGACCCAGACAAGATGCGTCTACAGCCCATCGGTAGAGACAAGGAAGGTCTTCTGTACTGGTTCCATTCAGATCAAGATCAGAATATACGTGTTTATTCTGAGGAACAGGATGATTTGGATGGATCCTCCTGGAAATGCATTGCGAGGTCTAGGAATGATCTTGCAGACACACTAGAAAAGCTTAAAGCCAAGATTGAACCAGCCGTGACTGACCAAGAGAAGCAAGGCTGTCCCACCAGCCCAAATATGGAGGCAGAAGGTGTTAAAGATGAGGCTGAGGACTTGAAAAACCATGAATCGGGACAAGGGGATTTCAATTCCAGTAAAAGTGAGTTAATACCTAAAGAGATTAAAAAAGAAACATCAATGGATCCTGTTAAACCAGAGCAACAGGAGAAAGTTGCTGTGATTTCCATACCTAAAGTGGTCATCGACAACAGGGTTAGTACAATCAAAACTCTTGTCAAAGAAGAACCAAAAGATTGTCCCAAACCATGGAATGCCATTTCTGTCGTCATGCCCCCTGTTGCCATCAAACACGAGCCGGCGAAGAAAACAGAGATGCACGATGACAAGAAAGAGATGATGTTTGAGAATGTGTCTAGAACTATAAAGAGCGACCAACAGGCTAAAATCCCGCTGAAGAAGAGGGAGTTGAAAAGGAGTGGAGGATTTGATGAGCAGCAAATCAAAAGAGAATACCCAACTGATGGGGAGAAAGGACCAACGGCCATCATCGCTGTCCCACAAAAGCTAATTGGGAAGCATTCACCTGTTGATCTTTGCCAGATGGCAACACGAGAACAATACGTAGGTGTTGGAGTTATCAAAGGTCCCATTGAGAGAAAGAGGCCTTTGAATGAAAACGATAATTCTTCAAATGGTCATCATGGGAACGGGAATGTCTTGAAGACTGAAGTTGGAGGCGCAGATAGCGCAAGACAGTCTGTACTTGTTGGGAAATCCATAGTTAAAGCAGACAATGGTCCTCATCCATGCAGTATCCCTGAGGATCTGGTGTCAAAAGATGTTTGTGATAAGAAACCAGATGTGGCAGCAAAAGCAACAAACCTTGTTGAGGAGTCTCCAATGATTGAAGAGATGCAAACCACTTCAGTTGAGGAAAAGGTTGATAAAAATGACAATGAAGAAGATGTTGCCGAACTCAAAAATAGAAAGACGGCAGCTTTGTCAGCCAGAGAAAAAACTGATGTTGTGGTTGAGGATGACAGCAAAGACAAAAGTCTGAAAAGCCCAAGAAAGAGAAGGTCACAAAAGGCCAAATCCAAGCTCCAAGCAAAAGAAGACGCCCAAAACACTGAGCTCTTATCCAGCATTGGTGAGGATTTGGTGAAGGATGTGGGAGACAGTGAAAAAATTGGACACAATGATAATGAAGAGGTGTCATCAGAGCTTCAGAAGGAAGGGATTCGTCTGAAGATTAAGATCCCGCTTCATAGACGAACGCCTGAACTCCAGCACAAGGACACTGAGGAGTCGGAAACCAGCAATCGGAGATCCCTACGGAGATCTGCCAGAATCTGCAAGCCCAGCCCCAAAGTGGCAGATAGCAGTCGGGATGGGAAACAAGATGGAAAACTTAAGGCCTCCTCAGCAGCACAGGACGAAGAGGAATGCATAGTAGATGAAGAGGTGAAAGTGCATCCCAAGGAGATAGACAAAAAAGTGGACATGGAAGGACAGCCTAAGTCTTTGAAGGCCAAACGACGACACAGGCGTACTCGTTGGTCGAAAATTCGTACGAAAAATTGCAAATCCAAAGGAGCTCCGGATAGGGAGGAGGAAGTAGCCGATGACAAAGCTGCAAGCAATGAAGACACCAAATCAGAGAGAAAAGACCACAAGAGTGGGTCTGAATCAGACCAATCCAACGAGATTCTACCTGAAGATGCTTGTAAACACTGTGGGCTCGCCAACCACCCAGAACTAATCCTTCTTTGTGACATGTGTGACAGTGGATATCACACGGCCTGTCTGAGACCTCCTCTAATGATCATTCCTGACGGAGAATGGTTCTGCCCTCCCTGCCAGCATAAGCTTCTCTGTGAGAGGCTGGAAGAACAGCTTCAGAATCTGGACACTGCATTGAAGAAGAAAGAGAGAGCTGAACGAAGACGTGAGCGGTTAGTGTATGTGGGTATCAGCGTGGAGAACATTATACCCAATCCAGATGGTGATGAAGAAGATGCCATGACAGAGAAGAAAAAAGATGCCAAGAAAAGTGCTGGTCGCGGTAAACCTGTGGCGACCGTCGCGAGTCAGCAGAGGAATACGGTGAGCCGAGAGAGTCGGCGGCTTGTGAAACCTCTCGCGCCGCGTAAGAGGAAACGCCGGCGACTCAATGACCTGGACAGTGACAGTACGGTGGACGAGGAGGAGAGCGAGGACGAGTTTCAGATTAGTGACAGCCTGGAGGAGGAGGATTTCGTGGTTTCGGGAGATGGTGCATCTGATGGTGATGCGGGGAGTGAATGGTGCAGTGGTGACAGTGACGCTGAGAATCAACCAGCCTCCAGGAGAACAGGAAGAACCACACACACCCAGAGAAACAGGAGGAGCAAACGCAGACCTCCTGCTCGACGAAGAGGCTCCTCAGAGGAGGACCTGTTAGACTCTGAGGAAGAGGAGGAGGAAGAGGAAGAAGAAATGGAAACAGAATGCTCTAATGAGTTCAGCGACAGCGACATGGACGTCAATAGAAGGCGTCCACGACGGAGTCAGAACTCTCAGGTCAACTACTATGAGACATCAGAGTCTGAGGGATCACGGAAGGCGTCCGATCAGAAACACCCCTCTCTTCCTCACCGTCGACGACTGTCCAGCTCCAACAGTGAAGAGTCCACGCTTTCTAAAGACTCTGAGCCAAAGGAATCACTTAAGAGATCAAAAAGAGGACGGAAGTGCGAGTCGACTAGGGAAGACTCCAAACCCAGGCACAAACTAATAAAACGGACACAGCAGAGAAGCTCCAGTGAAGACGAAGAGGAGGACGGAGGAGAAACAGAGGACTCTGAGGATGATGAACAGCCCCCCCGCAAAAGGTCGAACCGCATAGAAACAGACGAAGACGAGGAGGAGGAAGAGGAGAACACACGCGGAAACGTCAGGTGGAAGCACACGGCCAGAAACACTGCGGGGCCCCGAGGTCCCGTCCGGCACAACGGCTTGGTCCCGCTGAGGGCCGCAGCTCAGGATGACGATGACGATGAGGATGAGGAAGAGTTCACTGGTGTCACGGACCTTGTTAACTTTGTTTTTGACAGTGAACAGTTGTCATGATGTGTTCTGTAGGTAAAATGCATTTATTTTCTCATCGCCTTCGACTAGGAGCCACCTGTCACGGGAATGTCCCTCATCAGCCACCGTAGTTTTTGGGTGTAGTGGACCAAAAATGAAGCTTCCAGAGGAATGCCATAGTGTCCGTTCAGATGTTTGAATCCACTCCGTACAGCCGCATGCATCATCCTTCCCAGATTAGAACAGGGTCTCCTTAATACTACAGTAACCATTCCTCAGAGTAAAGCACTTTGTCATTAACGGCCAGTACAGTTTTGTTTGTATAAAGCGGCTTCTGTCGTCCTCCAGAGACACTGGATGGCGTGCATTTGAAGCTTATGTATTCTGTGCATTTTAGACTGGAGTTTTAGAGGTGTACGTTCTCTGTATTAATGTTTTCTTCTTTGTTATACATGAAAGAAAATTTGGGATTAACGTTTGATGCCGAACTTTGCCTAAATACACTCATCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12081184_12095030.mRNA True 4605 mRNA 0.47 16 12080748 12095500

Neighbor

gene id symbol gene type direction distance location
CI01000054_12064156_12077740 INTS4 coding upstream 2900 12063779 ~ 12077848 (+)
CI01000054_12049115_12062566 KCTD14 coding upstream 18182 12049115 ~ 12062566 (+)
CI01000054_12039863_12047999 RPS3.L, RPS3, RPS3.S coding upstream 32749 12039863 ~ 12047999 (+)
CI01000054_12030200_12039539 NA coding upstream 41209 12030200 ~ 12039539 (+)
CI01000054_11984922_12021876 FCHSD2 coding upstream 58803 11984922 ~ 12021945 (+)
CI01000054_12097635_12100640 CLNS1A coding downstream 1936 12097436 ~ 12100640 (+)
CI01000054_12142398_12166344 PAK1 coding downstream 46898 12142398 ~ 12166999 (+)
CI01000054_12191048_12211237 GDPD4A, GDPD4 coding downstream 94022 12189522 ~ 12211237 (+)
CI01000054_12296634_12299462 NA coding downstream 201134 12296634 ~ 12299548 (+)
CI01000054_12318711_12319755 SERP2, SERP1, SERP1.S coding downstream 223211 12318312 ~ 12320602 (+)
G236888 NA non-coding upstream 112449 11958290 ~ 11968299 (+)
G236895 NA non-coding upstream 122651 11957072 ~ 11958097 (+)
G236886 NA non-coding upstream 173365 11898230 ~ 11907383 (+)
G236972 NA non-coding upstream 224985 11854973 ~ 11855763 (+)
G236942 NA non-coding upstream 329021 11751514 ~ 11751727 (+)
G236887 NA non-coding downstream 16129 12111629 ~ 12170392 (+)
G237015 NA non-coding downstream 129096 12224596 ~ 12225316 (+)
G237016 NA non-coding downstream 130176 12225676 ~ 12226328 (+)
G236879 NA non-coding downstream 213955 12309455 ~ 12310013 (+)
G236874 NA other upstream 264273 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 431723 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 446684 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 511749 11564820 ~ 11568999 (+)
G235560 NA other upstream 1688370 10388136 ~ 10392378 (+)
CI01000054_12887165_12901376 NA other downstream 789402 12886994 ~ 12902006 (+)

Expression


Co-expression Network