CI01000054_12296634_12299462


Basic Information

Item Value
gene id CI01000054_12296634_12299462
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12296634 ~ 12299548 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12296634_12299462.mRNA
AGACCATGGAGGTCAGAATCAGTTCTTTGTTGAGTTTGATTCTCCTTTGGAACTTTCTATGTATTAGTAGCAGCAGAACAGAACACAGTGACATTTATGAGAGAAACTCTCAACAGTCGCCAGAGACTCTAATGAGTCAAACAAACCATCTGCAGGTCAGACCTGAAAACTCAGTTCACATTCATCCAGGAGAAACGCTGACACTTCAGTGCAGAGAGGAAGGAAATGAAGTGCTGGCGCAGTGGTGGCAGACACCTTTTGGATTGTTTGACGGCTGCAACCACCAAAACAAAGACCCAGTGGAAACATGCAATGGCACTTTGAGGATTTTAAGGGCCACATCCAGCCATGATGGACTCTATATCTGTATCCGCCTGGACAAGATGAGCAAAACAATTGTGCCTTACAGAGTTAATGTAGTGGGCTTAAATCCTAACATTAACAAACAGCCGAGGAAGACCAGGGAGGTTTACGCCGACACGCTGTCAGAAAGCCATTTCGCGGCGGCTGTGGCATCATCAGTAATCGTGAGCTTTTTAGTGGCCTTCACACTTGGTGCATTCAGTAGATCCTACGTAATAAAGTGTCTACGAACGATAAGGGCTCACATACCTTATAGAAAAGATGATCACAATCACATCAATGGAGAAAACAACGAACAAACCACCAGAGCACAACCTGAGACAGTGTTCTTCCATAAAAACCACGACAGTGGAGAAGACACTGTGGACATTAGTTTGGTTGATCAGGAACGCAGGACCTCTGATAATGTAGACGCTATAGGAAATGGAAATGCAGATGGCGGGAAGGATGATACTCAGGGCTGTGAAGGTGAAGAACAAAACCAAGAGTTCAGATCAGTGGTTAGTCCACATCCAAAGAAGAAGAGCCGCGTCATTAAATTGTACAACTATGATGAAGAAGGGAATCGATTCAGCCACATCAAAGACTCTGCGATGGAGGGTGAAGACAAGATCAGGCCAAAAATCAGAACGAAATCTTTGACGCGACTCAATGCCATCATGAAACAGGCAGACTTAAACCCAGTTAAAGATTCAGCTGAGAGCCAGTCGACTCAACCAGATGCTCCTTCCCATGAAAACGGTGTTTCAGCTACAGAAGGAGACGGAGTCTCACAAACAAGTCAAGAGACATGAAATGGAGGAAATGATCATTGTAAAGAACTTTGAAAATTTAACTGGGTCTGATTGGACGATTGACTTAGGCCTAACTGTCATTGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12296634_12299462.mRNA True 1243 mRNA 0.44 2 12296634 12299548

Neighbor

gene id symbol gene type direction distance location
CI01000054_12191048_12211237 GDPD4A, GDPD4 coding upstream 85397 12189522 ~ 12211237 (+)
CI01000054_12142398_12166344 PAK1 coding upstream 129635 12142398 ~ 12166999 (+)
CI01000054_12097635_12100640 CLNS1A coding upstream 195994 12097436 ~ 12100640 (+)
CI01000054_12081184_12095030 NA coding upstream 201134 12080748 ~ 12095500 (+)
CI01000054_12064156_12077740 INTS4 coding upstream 218786 12063779 ~ 12077848 (+)
CI01000054_12318711_12319755 SERP2, SERP1, SERP1.S coding downstream 19163 12318312 ~ 12320602 (+)
CI01000054_12321079_12339203 LRCH3 coding downstream 21531 12321079 ~ 12339203 (+)
CI01000054_12524575_12697096 UNC13C coding downstream 225027 12524575 ~ 12697096 (+)
CI01000054_12811634_12819065 NA coding downstream 512086 12811634 ~ 12819280 (+)
CI01000054_12846104_12850954 NA coding downstream 545630 12845178 ~ 12851346 (+)
G237016 NA non-coding upstream 70306 12225676 ~ 12226328 (+)
G237015 NA non-coding upstream 71318 12224596 ~ 12225316 (+)
G236887 NA non-coding upstream 126242 12111629 ~ 12170392 (+)
G236888 NA non-coding upstream 328335 11958290 ~ 11968299 (+)
G236895 NA non-coding upstream 338537 11957072 ~ 11958097 (+)
G236879 NA non-coding downstream 9907 12309455 ~ 12310013 (+)
G237043 NA non-coding downstream 58742 12358290 ~ 12360323 (+)
G237045 NA non-coding downstream 66253 12365801 ~ 12366046 (+)
G237047 NA non-coding downstream 68129 12367677 ~ 12367916 (+)
G236874 NA other upstream 480159 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 647609 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 662570 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 727635 11564820 ~ 11568999 (+)
G235560 NA other upstream 1904256 10388136 ~ 10392378 (+)
CI01000054_12887165_12901376 NA other downstream 585354 12886994 ~ 12902006 (+)

Expression


Co-expression Network