CI01000054_12321079_12339203 (LRCH3)


Basic Information

Item Value
gene id CI01000054_12321079_12339203
gene name LRCH3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12321079 ~ 12339203 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12321079_12339203.mRNA
ATGGCGGCTTCGGTGTTGCTCTCCACGGAAAGCGCCGTGCCTTCTTTTACCATCGGCCATCCCGCCGGAGTTACGGCGGCGGGAACTACCCATCACGGATTATCCAATGCTCCTGGACCCGCATCCTGGAACCGCTCGCTGGATCGGGCGCTGGACGAGGCGGCGGCCACTGGAGCGCTCAACCTGAGCGGCAGGAAGCTGAAGGAGTTCCCGAGGAGCGCCGCCGGACACGACCTGACCGACACCACCCGGGCCGATCTGTCACGAAACAGGTTGACGGAGCTGCCGGTGGAGGTGTGCATGTTTGTGTCACTGGAGAATTTGAACCTGTACCAGAACTGCCTCCGTTCACTACCAGAGAGTCTGATCAACCTACAGTCCCTCACCTACCTAAATATCAGTCGGAACCAGTTGTCCACTCTCCCCGCTCATTTGTGCCGACTGCCGCTCAAAGTTCTGATCGCCTGCAATAACAAGCTGGTATCACTGCCGGAGGATCTGGGCAAACTCAGACAGCTCACTGAACTGGACGTCAGCTGTAATGAGATCCAGACACTTCCTCCACAGATCGGTCAGCTGGAAGCTCTACGTGACCTCAACATCCGCAGAAACCACCTCGTTCGCCTGCCTCCTGGTCAGAAACGCAGGCACCTGCACCTGTATGAAATGAGTGATGTTTTTGATGTGTTGTGTCATTTCTGTGTTGATTGGTTTGCAGAGTTGGCTGAGCTCCCGTTGGTCCGGCTCGATTTTTCCTGCAACAAGGTAACGACAATCCCTGTATGCTACCGCAATCTCAGACACCTTCAGAGCATCATTCTGGACAACAATCCTCTGCAGAGCCCACCTGCACAGATCTGTATAAAGGGAAAGATCCATATATTTAAATATCTGAACATGGAGGCATGTAAAGCAGCATCAGACCTTCCAGACTACGACAGAAGACCACTGCCGTTCGGATCCTGG

Function

symbol description
lrch3 Predicted to be active in cytosol. Orthologous to human LRCH3 (leucine rich repeats and calponin homology domain containing 3).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12321079_12339203.mRNA True 966 mRNA 0.54 5 12321079 12339203

Neighbor

gene id symbol gene type direction distance location
CI01000054_12318711_12319755 SERP2, SERP1, SERP1.S coding upstream 1109 12318312 ~ 12320602 (+)
CI01000054_12296634_12299462 NA coding upstream 21531 12296634 ~ 12299548 (+)
CI01000054_12191048_12211237 GDPD4A, GDPD4 coding upstream 109842 12189522 ~ 12211237 (+)
CI01000054_12142398_12166344 PAK1 coding upstream 154080 12142398 ~ 12166999 (+)
CI01000054_12097635_12100640 CLNS1A coding upstream 220439 12097436 ~ 12100640 (+)
CI01000054_12524575_12697096 UNC13C coding downstream 185372 12524575 ~ 12697096 (+)
CI01000054_12811634_12819065 NA coding downstream 472431 12811634 ~ 12819280 (+)
CI01000054_12846104_12850954 NA coding downstream 505975 12845178 ~ 12851346 (+)
CI01000054_12887165_12901376 NA coding downstream 547870 12886994 ~ 12902006 (+)
CI01000054_12982344_12998857 NA coding downstream 641726 12980767 ~ 12999175 (+)
G236879 NA non-coding upstream 11066 12309455 ~ 12310013 (+)
G237016 NA non-coding upstream 94751 12225676 ~ 12226328 (+)
G237015 NA non-coding upstream 95763 12224596 ~ 12225316 (+)
G236887 NA non-coding upstream 150687 12111629 ~ 12170392 (+)
G237043 NA non-coding downstream 19087 12358290 ~ 12360323 (+)
G237045 NA non-coding downstream 26598 12365801 ~ 12366046 (+)
G237047 NA non-coding downstream 28474 12367677 ~ 12367916 (+)
G237052 NA non-coding downstream 41228 12380431 ~ 12380747 (+)
G237063 NA non-coding downstream 54376 12393579 ~ 12393793 (+)
G236874 NA other upstream 504604 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 672054 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 687015 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 752080 11564820 ~ 11568999 (+)
G235560 NA other upstream 1928701 10388136 ~ 10392378 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location