CI01000054_12811634_12819065


Basic Information

Item Value
gene id CI01000054_12811634_12819065
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12811634 ~ 12819280 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12811634_12819065.mRNA
CGACATTATCGGTCCAATAAAAACAATCCAGTGAACGAACGAAATTTTAAAACGTGTAGCTTATCATCAACCGCTCGACTGTCACGCGCCGGTTCGCGTCACTTTAAAATTCAAACAGAAATAACGGCTATAACGTATCTGCTTATGAGTTGCTCAGTCGCGATGAGTGGAAATAGCTTAAGTGGTCCTGGAAAAACACGCTTTCCAGGCCTTAAATATTTCGTAAAAGAAAGACAAGCAGAGTGTGTTGAAGGGAACGAAAATGGGGAGAAAAACGAAGCTGAAGGCGAAACCTATCGCTGGGTCTTGCACCCACGGAGTCACTTCAGGCATTACTATCTTGTGTTTATGGTGGTCCTAACATTCGTAAACCTTATAACAATTCCTCTAGACATGGCATTTTCTGATGATATGCATGATAGTGCCCACAAATACTGGGTGGCCTTCAATGTATTCTCAGACGTCATGTTTTGTATTGATGTTGGCTTTAACTTTCGAATGGGTGTTTTCAATGAAGACGGTCAGGCCATCCTTGATCCAAAAATAATAAGAAAGGATTATTTCAGTTCTTGGTTTGTTCCTGATGTGGTGGCTGCATTTCCGGTCGACATTATCATTATCATTGTGGAGCATTTTTATCACGCTGACACTATTTCACTGGTGGCTTCGAAGATGGTGCGGATACTTATGTTTGTGAGGGTTCTCAGTCTGATCCGTTTACTCCGTGTGCCAAAGCTTCTGAGATTCTGCTTTGAATTGGAAAGTGTCTCCGATATACAGCTCGAAGTAGTCAGGAGGTCATTCAGGGTTTTCTTTGTTTTCCTGATGATGGTTCTCATTTGGCACTGGAACACTTGTGTTCAGTACTTCCTATCTGTAATGGAAGAGTTTCCCCCAGACTGCTGGGTTGTACAAGAGAACATTGTGATGAACCAGCTACAGTCCTCCACAATGTTCCAAAAGCTGCCCAGAATGTTGCGCCAACGGACCACTGCCCAGTACAAGTGGCAGTGGGATAAGGAGAACATCCTTGACTTGTTGTCAGAACGGCTCAGAAAGGATATTATGGCAGAAGTATGTTCCAACCTGCTGAACAAAGGCTCCATGTTTATGAAGCTTAACAGAGAATTCACTGAAGCCATCTTGATAAAGTTGGAGAATGAGTTCTTCAATCCAGGTGACATCATCATTCTTCAGAATTCTGCAGTTGACCATATGTTCTTCATTGACTATGGACGGGTGCTGGTGAAGAACGAATCTTTCCACATGGAGCTGTGTGATGGAGATCACTTTGGAGAGATCAGCTTCCTATTTGGTGGAAGGCAGTTGGCCACAGTTTCTGCTCTGACCAGCTGCAGCCTTTTCTCCCTGTCATTGCAAGATTTTCAGGAGATTGAGAAAGAGTTCCCACATGTTGTGGACGAACTGAGGGCAGCAGCTCAACAGCTTAAAAATGATCTAGAAAGTGATGAGCTGTTTCTCCAAGTTACATCAACATCGAGCAGTGTGTGAGAAGACAGACTAGCATGTAGTGTGTTTGTTTTTCATTTAATATCTTGAATAAGATTATTTTATTTTCATAATTTAAAAAAAGTTAAATAACATTCAAACTAGGTGTTTATAGTTTTAGATGTTTAAGGTGCTGTAATCATATAATTTTAATATAATTTTTATTTTAATAATTATTAATATACTTCACAAAACGTATCAATACAATTTTCAATACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12811634_12819065.mRNA False 1727 mRNA 0.41 9 12811634 12819280

Neighbor

gene id symbol gene type direction distance location
CI01000054_12524575_12697096 UNC13C coding upstream 114538 12524575 ~ 12697096 (+)
CI01000054_12321079_12339203 LRCH3 coding upstream 472431 12321079 ~ 12339203 (+)
CI01000054_12318711_12319755 SERP2, SERP1, SERP1.S coding upstream 491664 12318312 ~ 12320602 (+)
CI01000054_12296634_12299462 NA coding upstream 512086 12296634 ~ 12299548 (+)
CI01000054_12191048_12211237 GDPD4A, GDPD4 coding upstream 600397 12189522 ~ 12211237 (+)
CI01000054_12846104_12850954 NA coding downstream 25898 12845178 ~ 12851346 (+)
CI01000054_12887165_12901376 NA coding downstream 67793 12886994 ~ 12902006 (+)
CI01000054_12982344_12998857 NA coding downstream 161649 12980767 ~ 12999175 (+)
G237374 NA non-coding upstream 181891 12618522 ~ 12629743 (+)
G237376 NA non-coding upstream 198106 12612022 ~ 12613528 (+)
G237369 NA non-coding upstream 372047 12439369 ~ 12439587 (+)
G237075 NA non-coding upstream 384221 12427038 ~ 12427413 (+)
G237072 NA non-coding upstream 390849 12420378 ~ 12420785 (+)
G237436 NA non-coding downstream 51436 12870716 ~ 12878293 (+)
G237621 NA non-coding downstream 135252 12954532 ~ 12954797 (+)
G237627 NA non-coding downstream 147348 12966628 ~ 12966937 (+)
G236874 NA other upstream 995159 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 1162609 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 1177570 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 1242635 11564820 ~ 11568999 (+)
G235560 NA other upstream 2419256 10388136 ~ 10392378 (+)

Expression


Co-expression Network