CI01000054_12846104_12850954


Basic Information

Item Value
gene id CI01000054_12846104_12850954
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12845178 ~ 12851346 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12846104_12850954.mRNA
GTATATATACACACCTCCCACCACTCCAACCAGAGTAGCAAATGCAATCTGATTAAAGGGAATCCGTCTTCCAAACATGATCTTATGTTATGAAGGAACAGAAGAACCCATAAGAGACACAAAACATCCCACTCCTAAAAAAATAAAATAAAAATAAAAAAGTGTGTTCGCTGCATATTGTATATCAGATCTTCTTCGGCTGTTTGTGGTATTTTGCGTATGCATAAATGATGTATAACTGCATCTGTACAATACAGTACATGAGCATGTATTATAGATGACAATATTCACTTACGCTAAATGTGAAGAAACTTATCGCAGAAACATTATAAGGCTACGACAACATTCAACACATGTATATCTTAATTTTGTAATTAATGTTTTTCTCACTCACCCTGACGTTTTCAATCTTTTCCAGTTATTTTAAAAGAGTTTTTAGAGAAGTCTGCAGTTAAAACACATGTAAGACAAGGACAACCGAGCGACTACGGCAACTCACGCAGGCCAAATGCGACGTATACATTTCCGCATTTCAATTTTTTCAACATAAATTCATAATAAGATGTGTTAGACCCTATTTTTATAAACCACGATTCATATTTCAATAAACATAAAATTATTATAAACATTACATATTAAGCGTTAAAAGACCTGCATTTACGTCTTTATTACATATTCATGAGACGCCATGACCAAAAGACAGAATGCTTCACACTCCAGTCCAGTTGGTGGCAGTAGAACACCATAAGTTGGCTTGTCAACCGCCATTAAATCGTACAAGAAGAAGATGACCCAAACACGGAAATAGATCTTCAAGTGTCTAAATTTAAGGCAGAAAACACTACGTAAATGCGCCAGAAAATGAACATTTACAGCCGGAGTTAAAATGCTGAACATTGAAACTCATTTGAGGTTTATGTGGAGAAATGGAAAAGATTCGAGAGCGCTTCAAATTGAACAAATCCTCATGTGAACCAGTGAGACTGAGAAAGAGGAGCTCCATTCTGTACAGCACAGATGACAAGAGACCTCAAACACTTGAAACATTAACTGTAAATGAGATCCTTAACCTGTTTATCACTTATGGCTACGAGACCTGGGAATGGAAGGAAGGCATCCGAGGATATTCTTATCCTCTCCTGTTCGCTCTGATGTATAAACTCCTGTATCTGATGAATTATGACACAGCGTATCTGTTGGTGTTTTTGCCACGTGTTTTCCAGGCACTGCTGGCTGCATATGCCGACGTGAAGCTGTACCACCTCGTCCAGCAGTGGGAATCTCCAGATGTGGCCAAATGGACATGTTTCTGTCAGCTGTGTTCATGGTTCACCTGGTACTGCTGCAGTCGGACTCTGACCAACACCATGGAAACGGTTCTGACCACCCTGGCGCTTTGCTTTTACCCATTACCTGGCTCTAAAATGCACAACAGGGCTCTTGCACTGGCCGTCTCGACACTGATAGACTCTGTGTTCTATGGAAAGTGGATCCTGGTCCAATGGAACTTCCTGAAGTTTAACGTGCTGCACAATGTGGCGGAGTTTTATGGAGCACATCCGTGGCACTGGTACTTCACTCAGGGTCTGCTGGTCGTGATCGGACCTCACATACCGCTCTTCATGCACGGTTGTTCATTGGCCACCAAAAAGCACAGAATCCTGCTAATAACCATCTTATGGACTACAGCCATTTACAGTTTGCTCGCACACAAGGAGTTCCGGTTTATTTATCCACTGTTGCCATTCTGTATGATATTTTGCGGTATGTCTTTAGCGAAGCTACAAGCATGGAGGAAAACTGCTGCTGGTGCACTGTTGGTGCTCAATCTGTTTCCTGCCTTATATACGGGTTTAATTCACCAGCGTGGATCTCTGGATGTCATGCATGACATACAACGGCTGTGTGACATCAGTGACTCTCAGAACTCACCTGAGCTGCTGTTCCTCATGCCCTGTCACTCCACACCACTGTACAGTCACCTACATTGTCCCCTTAAACTGCGTTTCCTGGAGTGTCCACCTGATCTTACAGGAAATGAGGAGTATGTGGATGAAGCAGCTATGTTCTTCTCCAACCCTCTTCAGTGGCTCAGAAAGTCCTTTCCATCTCAGTCAACGTTACCTTCACATATAGTGCTGTTTGACTCCCTGGAGAAGGAAATTGCAGCATTCCTGGAGGAAAACCGATTTACCAAACAAGCTGAAATTTTCCACACTCACTTTCCTGAAGGTCGACTGGGAAAGAACATATTAATATACACCAGAGGATCTGGACTAAAGATGAATTAATTTTTATTGTTTGAAAATGTACAACCAATTGCAAACTTATATAAAGACTTGCTTTATTTTTGTTACATTGTTTCTTTGATTTCACACCAGACTCGCAAACACTTTTCCAGTGTAAGATCCATTTCTGTTTTAGCTTGATTTGTCAAGGCAGGAGGACAATTATCAATGAAGCATCGAAAGACTTTTATTCTACAGTTTAAGTGCAACATAAGCAGTTAAGTGCATTTGTGTTCAGTTACATTAGAGCAGATGACTAGTGCATCTTACAGCTGTTTCCAAACAAGGAATGTTACTTAGCCCATAACCACTCAAAAAAGAGGGGAAAATAGTGCAGTAACAATTGCAGATTGAAACTATTTCAAATAATATCTTCAACTGATTAGCATGTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12846104_12850954.mRNA True 2683 mRNA 0.41 10 12845178 12851346

Neighbor

gene id symbol gene type direction distance location
CI01000054_12811634_12819065 NA coding upstream 25898 12811634 ~ 12819280 (+)
CI01000054_12524575_12697096 UNC13C coding upstream 148082 12524575 ~ 12697096 (+)
CI01000054_12321079_12339203 LRCH3 coding upstream 505975 12321079 ~ 12339203 (+)
CI01000054_12318711_12319755 SERP2, SERP1, SERP1.S coding upstream 525208 12318312 ~ 12320602 (+)
CI01000054_12296634_12299462 NA coding upstream 545630 12296634 ~ 12299548 (+)
CI01000054_12887165_12901376 NA coding downstream 35727 12886994 ~ 12902006 (+)
CI01000054_12982344_12998857 NA coding downstream 129583 12980767 ~ 12999175 (+)
G237374 NA non-coding upstream 215435 12618522 ~ 12629743 (+)
G237376 NA non-coding upstream 231650 12612022 ~ 12613528 (+)
G237369 NA non-coding upstream 405591 12439369 ~ 12439587 (+)
G237075 NA non-coding upstream 417765 12427038 ~ 12427413 (+)
G237436 NA non-coding downstream 19370 12870716 ~ 12878293 (+)
G237621 NA non-coding downstream 103186 12954532 ~ 12954797 (+)
G237627 NA non-coding downstream 115282 12966628 ~ 12966937 (+)
G236874 NA other upstream 1028703 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 1196153 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 1211114 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 1276179 11564820 ~ 11568999 (+)
G235560 NA other upstream 2452800 10388136 ~ 10392378 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013158 pigb coding NC_007129.7 CM002902.2 2203945 ~ 2222128 (-)