XLOC_009893 (gtpbp10)


Basic Information

Item Value
gene id XLOC_009893
gene name gtpbp10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23891443 ~ 23902439 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019737
CCATGTTTCCGGAAGTATACACGTGTTTGGCCCTGAACTTCAGTCACCCTGTAGCTTAAAACAATCACTTCAGTACGTTCTTTTCTTTCAAGAGTTGTTTTGGGATGGTGTGGACAAGCAGAATTTGTTTCCGGAAGtatggcAATTTTGTGGATAATGTACGGCTGTATGTTAGAGGTGGTACTGGAGGAATGGGTTTGCCCCGTTTAGGTGGACATGGAGGGGATGGTGGAGATGTATGGGTGGTAGCCAAAAAAGACACTAGATTGAAGCAAATTAAAGACAAGCACCCTGACAAGCGGTTCATTGCTGGTGTTGGTTCAAACAGCAGtattcAAGCTTTGCGAGGTGCTAAAGGAGAGGACGTTGAAGTCTTTGCACCCACAGGAATCAGTGTTACATCAGATCATGGGAGAATGCTAGGAGAATTGAACCGTGAAGGAGACAAGCTTTTGGTGGCGAAAGGTGGTCGCGGTGGCTCTCCACAATCAGGGTTCTTGCCTAATAAAGGCCAAACCAGAAATATCCGGCTGGACCTCAAACTCATTGCAGATTTCGGACTTGTTGGGTTTCCTAATGCAGGCAAATCTTCCTTGCTGACCGCCTTGTCTCATGCTAAACCAAAGATCGCCAACTATCCCTTCACGACGATAAAACCTGAAATTGGAAAGGTCATGTATGATGACCACAAGCAGGTTTCAGTAGCAGATTTACCAGGACTCATTGAAGGTGCTCATGTGAATAAAGGCATGGGACACAAATTTCTCAAGCATGTAGAGAGAACTAAACAGCTCATGTTTGTGGTTGACGTCTGCGGGTTTCAGCTTGCTAGTAAAACGCCATTTAGGTCTGCGTTTGAAACCGTGCTGCTTTTATCCAAGGAGCTGGAGTTGTACAAGGAGGAGCTGTTAAGCAAGCCTGCTATCTTGGTCATAAATAAAATGGATCTCCCAGAGGCTCAAAGTCATTTCCAAGAGCTAGAAGCTCAATTGGAGAACCAGGGAGAATCAATTCATCTGTTTTCTGAAGACGTCATCCCTAAAAGCCTAATGCATTTCACTCACATCGTGCCAGTGTCTGCCATGACTGGTCATGGACTGCCCTTGCTCAAGTCCCTGATCCGGCAGTCGCTTGAGGAGCAGGACACCATAGACACTGAGGCTCAGCGCAGTCAGAAGATCCTAGAGCTGAGAAGGGAGATTCCTTCTTCATCCATACCCAGCTGGGGTTTGCCACAACCCACCTGAGCTCACACGTAGGTTTGCGTATGAAATGCTGGTGGACATTTGTGGACATGGGAAATCTGCAGCatgtaattaaaatgcatttagtgAATCACAAATGCTTAACAAATCAGTCTATGTTGAATAGATTAGTATTTGTGCCTTATGTGTGTATAACTGTTTCCCCTCTGACATTAAAATGCCTGGGTAAACTTTCAGGTAATGTTCTTGAAGATGGTTTAGTCTTCTCTCAGTCTTATCAGGATGGCTTGACTTGCTGGAGTTGAAGTGGATTCAGAAACTGGTTAGCTGGTTTGTAATAATTTATTCTGCTAAAGTGAAAAATTTGCCATTTGGACTATGGCTGAGAAACAAAACATGTTTGCATCTTGAAAAGCTATAATGAGAAAACAAGAATCCTCAGATTTTTTATGTCTGGGAGTTGTTTTTAAACTTTGCTAAaagttgaaatatttaaaaagctttAAGTATGTGAAGTTATTAAAAggtgcattttagttttatttaaatccCTGGCCTGAGTcaattttgggatttttttttttcccttttttttgtaaagttttgtaaatacaacaaaaatgaccattttagtttttgtcattatttatatttatgcagtTATCCTCCATGCTTTTCTAGGTCTCAAACTGCCAGCCCGCAGGCCCCCAACTGATGTCAAAAATATGAGATTTGGCGTGCCAAAacatatgtttttaatgttttgttttgaccCACTACCTACTCGACAATTATAGTACTGCATTCAGATAGTACGGTCGAAAGCAATACGCATGCATTTTAATTATGTGgctgatttaaatgttaaaatatgtgtCCGTAAGTGCTGTATTCTTTTCTAAAGCTctattgtaaacagtaaaggtttgtttgattat

Function

symbol description
gtpbp10 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be active in mitochondrion. Orthologous to human GTPBP10 (GTP binding protein 10).

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-153 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be active in mitochondrion. Orthologous to human GTPBP10 (GTP binding protein 10).

Ensembl:

ensembl_id ENSDARG00000040300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019737 True 2143 mRNA 0.41 10 23891443 23902439

Neighbor

gene id symbol gene type direction distance location
XLOC_009891 si:dkey-7f3.9 coding upstream 55521 23811554 ~ 23835922 (+)
XLOC_009890 rab13 coding upstream 81832 23796612 ~ 23809611 (+)
XLOC_009888 kcnn3 coding upstream 171794 23598908 ~ 23719649 (+)
XLOC_009889 CR533578.1 coding upstream 284091 23607231 ~ 23607352 (+)
XLOC_009887 adar coding upstream 333729 23531583 ~ 23557714 (+)
XLOC_009894 apoa4b.1 coding downstream 11504 23913943 ~ 23916263 (+)
XLOC_009895 apoa4b.2 coding downstream 19171 23921610 ~ 23922868 (+)
XLOC_009896 si:dkey-7f3.14 coding downstream 21307 23923746 ~ 23924845 (+)
XLOC_009897 apoa4b.2 coding downstream 44757 23947196 ~ 23948538 (+)
XLOC_009898 apoeb coding downstream 58305 23960744 ~ 23963461 (+)
XLOC_009875 NA non-coding upstream 1194947 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 1312117 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1562415 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1563941 22323766 ~ 22327502 (+)
XLOC_009902 NA non-coding downstream 116669 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 296040 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 613653 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 663295 24565734 ~ 24573801 (+)
XLOC_009910 NA non-coding downstream 932336 24834775 ~ 24897111 (+)

Expression


Co-expression Network