CI01000054_12982344_12998857


Basic Information

Item Value
gene id CI01000054_12982344_12998857
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 12980767 ~ 12999175 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_12982344_12998857.mRNA
ATATAAATTTGTCCATGTCTTCTACTTGACAGTGATTTTTCTCAGAATGTCCTCTAGATGTCAGGCATGCATTTATCTTTTGCTAAAAAAGCACAGGTAATTGGTCCATTCAGTTCATACAGCTTATAAAAGCTCTGAACGCAATGTATACAATTAATTACTAGCCTAATTTATGTTTTGGTGTGGGCAGTCAGAGTACTGGCAACATGTGAGAAGTGAAAGTACGCAATAACAAGTGAGGGTAAGCTACAGATTAAAATATAGAAGTCCCAGTTATGCAAACCGGCCCACTTCAAGCACTGCTTAGTTGTGATTACAATCCTTTTTTATGCAATTGCAAAATATTTACTGTATACAACTTACCTTTTTTTCTGTGACTGCATGCTCTCGTCACAGTTCTGTTTAGTGTCATTTTTAGTGACTTTTAGTTTATTTTCAGTGTTTTGTTTGTCTAGTTTCCTGCCACTTATGAGTTGTCATGGTTACTGATATGATTAGTTCTATTAGTTCAGCTGTGTCTCCTTATTAACCTTGTTTGTACCACTACTTAAGTTCCTTTGGTTCCTCTGTTCATGGTCAGTTGTTGTTTGTGTTTTATACCCTCAGTTAGTCTGTGTGGATTGTCTGTGTTTGTTTTATTATTAAATGTACTAGAACCTTTCTACTCTTCTTCATCTTTGGATTTTTAAAGTTGTGACAGCTCTGGGTACTGTGTTATTTTTTTCTTCTTTTGATGATTCTTTTTTTGATGTAGTGTCTAATGAATGCTCTGTAGTGTTTAAATATTTACTAAGGCTGTCAAAATTAATGCGTTAACACAAATTCATTTTAACAGCACTAATTTTATTAACGTGCATTTTCTGTTTGACCCGTGGCCTAGACCATAGTTGATGGATGTGCAGAGCAGTGTAGAGGCTTTATTCATCAAGTAAGAATTTACTTTGATAACCAGGAAGACAAGTTTGTGTCAGAAGAAAAGAAATGCGCTTTCATGATGACGTTATTGTCTGGCAAAGCTCTAGACTGGGCTGTGGCAGTTTGGGAAATGGATGTACGATTTAGAACATCTTTTGATTATTACATCCAACAACTGCAAAAAAGTGTTTGAATATCCCCCTGGGGGCAAGGATATATCAACAAATTCTACAAATGTCACAGGGTAACTGTACTGCTGCTGATTATGCCATCATGTTCAGAACGCTCGCTGCTCAAAGTGGATGGAATGATATTTCACTGAAAAGCGTTTTTCAACGGAGCCTCAACCCTGATCTGCAAACAGAGCTGGCTTGTAAAGGAGAAAATGTATAATTTTCTGACTTTGTGACTCTCACTATAAGAATTGATAATCTGATGAGACAAGACGTAGAAGCGTGAGGGAATCTCAACACTTTCCGCCTGCCATCTCGCAACCCATGATGTCATCAACCACCAAGCCAAGTGACGAACCCATGCAACTAGGTCTATCTAGACTATCTGAGGAAGAAAGAATGAGAAGACAACAACTCCGTCTGTGCTTTTATTGCGGTGAAGCTGGCCATCACAGTCCAGGGTGTCCACATAAAGCCCAGACAACTTCTCAGGTAAATATTGAACATTTCTCACTACTAAGTAACAAATCATTAAAGCTCCCCATTAATCTAAAGACTGAAGATGCATCTATTTCATTAATGATCGATTCCGGGGCAGCTTTGAATCTGATACATAAGGATCTTATCAAGAAGTATGACATTCCCACTCAACCATGCAAGCCACCTATCAAGATCAAAGCCGTTGATGATAACACAATTGGAGAGGGGATTATCAATCAGACCAAGCCATTAACACTCCAAGTCAGTTTGTTACATCAAGAATTGATCTCCCTGTATGTCACTGACTGCCCTAAGCATGAAATGATCCTCGGATTTCCATGGCTATCCATTCATGACCCCATTATTTCCTGGCATCATGCCTCACTCACTGCACGTTTGCCCGTTGCGCGCGCTGCAGAGAGCGTCCGGCATTTTCTGAAGCTGAGAAACCCGCTGGCCTCAGTTATTGCGTGCTGCAGAGTCCTGCATTTTCAGACGTTTTTATATCAGATGAAAGTCAAAGGACCCTTTCATCTGAAGGACTGCGGCAATGGGGACCCTTTGAACCACCGGTGGCAGTTTCTACAGGATGAGAAAGGACATGATAGAGGATGACAGGGGTCTTGATATCTCACTGACATTATCCTGCTGTACTGACTGTATCACACACACATACAGTGGTCAAAAGTTTACATCACATTGCAGAATCTGAAAAATCTTAAAATAAGAGCGAGTTGTTTTTTCATTCTTAATACTGTTGTTACCTAGATGATCAACAATTGTTTTTTGTTTGTTTTGTGATAATTGTTCATGAGTCACTTGTATGTCCTGAGCAGTTAAACTGCACACTGTTCTTCACACTGAGGACAACTGAGGGGCTGTTGTTGCTCATTACACTATGCTTTTAATTATTCTGATATGGTCAATTTCACA
>TU269562
GCTTTGGTGCCAGAATAGTACTGAAGTGTTTATTTGTTAAATCAATCCTTAAACTGGGAGAGAAAAACCAGCAAGAAATAATGGACTTTTTTTTCAGTGAATTACTTCTCAGGTTATTTAGAAACAACTGAGAAACAATCGGTTTTATTGCTATAGCATATTATATAAATTTGTCCATGTCTTCTACTTGACAGTGATTTTTCTCAGAATGTCC

Function

NR:

description
gag polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_12982344_12998857.mRNA False 2501 mRNA 0.39 4 12980929 12999175
TU269562 True 214 lncRNA 0.32 1 12980767 12980980

Neighbor

gene id symbol gene type direction distance location
CI01000054_12887165_12901376 NA coding upstream 78923 12886994 ~ 12902006 (+)
CI01000054_12846104_12850954 NA coding upstream 129583 12845178 ~ 12851346 (+)
CI01000054_12811634_12819065 NA coding upstream 161649 12811634 ~ 12819280 (+)
CI01000054_12524575_12697096 UNC13C coding upstream 283833 12524575 ~ 12697096 (+)
CI01000054_12321079_12339203 LRCH3 coding upstream 641726 12321079 ~ 12339203 (+)
G237627 NA non-coding upstream 13992 12966628 ~ 12966937 (+)
G237621 NA non-coding upstream 26132 12954532 ~ 12954797 (+)
G237436 NA non-coding upstream 102636 12870716 ~ 12878293 (+)
G237374 NA non-coding upstream 351186 12618522 ~ 12629743 (+)
G236874 NA other upstream 1164454 11813688 ~ 11816475 (+)
CI01000054_11648262_11648786 NA other upstream 1331904 11647959 ~ 11649495 (+)
CI01000054_11633235_11635069 PRF1.8 other upstream 1346865 11632959 ~ 11635103 (+)
CI01000054_11564820_11568338 S100V2 other upstream 1411930 11564820 ~ 11568999 (+)

Expression


Co-expression Network