Gene
RNA
| Item | Value |
|---|---|
| gene id | G229994 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 97733 ~ 98022 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU261004 | True | 290 | lncRNA | 0.42 | 1 | 97733 | 98022 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_00147623_00148143 | NA | coding | upstream | 49569 | 147591 ~ 148255 (-) |
| CI01000054_00188121_00191695 | NA | coding | upstream | 89775 | 187797 ~ 191958 (-) |
| CI01000054_00195914_00197098 | NA | coding | upstream | 97204 | 195226 ~ 197219 (-) |
| CI01000054_00888859_00895223 | LRRC14B | coding | upstream | 790426 | 888448 ~ 895223 (-) |
| CI01000054_00898039_00902381 | NA | coding | upstream | 799520 | 897542 ~ 902381 (-) |
| G229599 | NA | non-coding | downstream | 78139 | 19281 ~ 19594 (-) |
| G229995 | NA | non-coding | upstream | 5266 | 103288 ~ 103570 (-) |
| G230063 | NA | non-coding | upstream | 157301 | 255323 ~ 255615 (-) |
| G230073 | NA | non-coding | upstream | 199915 | 297937 ~ 298168 (-) |
| G230085 | NA | non-coding | upstream | 292505 | 390527 ~ 390743 (-) |
| G230092 | NA | non-coding | upstream | 308372 | 406394 ~ 552909 (-) |
| G230178 | NA | other | upstream | 1087511 | 1185533 ~ 1230135 (-) |
| G230923 | NA | other | upstream | 2739215 | 2837237 ~ 2837682 (-) |
| CI01000054_02857402_02860451 | NA | other | upstream | 2756119 | 2857402 ~ 2860573 (-) |
| G230908 | NA | other | upstream | 2959626 | 3057648 ~ 3063343 (-) |
| G231645 | NA | other | upstream | 3883825 | 3981847 ~ 3982823 (-) |
