G230092


Basic Information

Item Value
gene id G230092
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 406394 ~ 552909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261105
ATTTTCACAAGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACACCGTTTTTGTGTGTGTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTACATTCTATTGTTAGTGACGTCACTAACCTGGCAAGAAGCTCGTTGTAGTCCCTACCAGTCATTTGTTGTAGTCCTTAAACAGTGAATTCTTTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGTGTTGTAACTTTGCAGATGTTGTTTATGATCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGCGAAATCATAAT
>TU261102
ATTTTCACAAGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACACCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCACGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAAACCCGTATGGACGCCCACTATACATAGCGCACCTGTTTTCCAAACAGAGCCATACACACCAGGCTAACGTTTATGATTGCTATCAAATGCTGTGAAT
>TU261103
CCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCGCGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAACCTTACATTGTTCAAACCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAATTAATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAAACCCGTATGGACGCCCACTATACATAGCGCACCTGTTTTCCAAACAGAGCCATACACACCAGGCTAACGTTTATGATTGCTATCAAATGCTGTGAAT
>TU261104
ATTTTCACAAGATGTAATATAAGTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACACCGTTTTTGTGTGTGTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTTGTGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGTAACGGTCTTCAGCCTTACATTGTTCAAACCGGAGTCGGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAAACCCGTATGGACGCCCACTATACATAGCGCACCTGTTTTCCAAACAGAGCCATACACACCAGGCTAACGTTTATGATTGCTATCAAATGCTGTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261105 False 493 lncRNA 0.40 4 406394 527839
TU261102 False 554 lncRNA 0.44 3 474111 527839
TU261103 False 379 lncRNA 0.44 3 474111 552909
TU261104 True 551 lncRNA 0.43 3 474111 527839

Neighbor

gene id symbol gene type direction distance location
CI01000054_00195914_00197098 NA coding downstream 209175 195226 ~ 197219 (-)
CI01000054_00188121_00191695 NA coding downstream 214436 187797 ~ 191958 (-)
CI01000054_00147623_00148143 NA coding downstream 258139 147591 ~ 148255 (-)
CI01000054_00094396_00130159 NA coding downstream 276209 94260 ~ 130185 (-)
CI01000054_00888859_00895223 LRRC14B coding upstream 335539 888448 ~ 895223 (-)
CI01000054_00898039_00902381 NA coding upstream 344633 897542 ~ 902381 (-)
CI01000054_00924015_00926256 GATAD1 coding upstream 370825 923734 ~ 926256 (-)
CI01000054_00929337_00955240 ANKIB1A coding upstream 376223 929132 ~ 955674 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding upstream 411733 964642 ~ 970121 (-)
G230085 NA non-coding downstream 15651 390527 ~ 390743 (-)
G230073 NA non-coding downstream 108226 297937 ~ 298168 (-)
G230063 NA non-coding downstream 150779 255323 ~ 255615 (-)
G229995 NA non-coding downstream 302824 103288 ~ 103570 (-)
G229994 NA non-coding downstream 308372 97733 ~ 98022 (-)
G230150 NA non-coding upstream 104772 657681 ~ 670511 (-)
G230305 NA non-coding upstream 300533 853442 ~ 853773 (-)
G230308 NA non-coding upstream 304427 857336 ~ 857561 (-)
G230311 NA non-coding upstream 308012 860921 ~ 861246 (-)
G230148 NA non-coding upstream 311049 863958 ~ 886225 (-)
G230178 NA other upstream 632624 1185533 ~ 1230135 (-)
G230923 NA other upstream 2284328 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 2301232 2857402 ~ 2860573 (-)
G230908 NA other upstream 2504739 3057648 ~ 3063343 (-)
G231645 NA other upstream 3428938 3981847 ~ 3982823 (-)

Expression


Co-expression Network