G230108


Basic Information

Item Value
gene id G230108
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 454492 ~ 657177 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261122
TGATTATTTACACTAGTGGGATTTTGTTCCTGGTATATCATTCCTATCAAACAACCACTGCCCAGAGCACTGAGACTGGCTGAGAGGAATATTGATTCAGGAACAGTAAAGAATGTCCTACCTGTGTAAATGACTGTATATGTATCATCTTACCGTCACAGACTGTGGATAAGATACTCACACTTGTAAGATGGTTTTGGGGTCTCCTACTTCCCCTCCATCACCGATGGTTAGCGTGTCATAACCCAGTTCTAGGTCAAACTCCTCAAAGTTAATCTGAATCACCTTGTTTAGGTTGCTGGCTGTGATGATCCACACACACTGGGAGTTGCTCTCATACTGAATGGGGAAATTCGGTGAGGTGAAAGTCCCTGACGGACCTTGAAGATTTGATCCACAAGTTTTCACTCTACAGACAGGCCTATGATCAGTCCATGCCGCGAACACCTCCGCCACTCTCTGACACGTGATGCTCTTGGAACCCTGTAGAACGTGATCTTCATCACAGGTGAACTGGGCTGTGGCACCAATACTAAAGTCGTTGCCAATGCGCTTGCCGTTTTCAGGTTCCCCCGGGTCTGGACAGGAGTTAGAGGCCTGTTTGATTCCTCCTTCGTTTAAGATAGAAAACTTGTTGCTGTTGTCTTTGCCAGGGAATAATTTTACTCCTCTAGATTTGAAATCTACAGACCTTTTCACTTGATAATGGGCACTGAAGCCTTTGTATCGATGGTTGCTGTCAGTAACAAAGTGTAACCTCAGCCAGTTCTTGTTGCTAACAATAGGAGATGGGACATTCATTCCGGATAGCCATATTGCTGGCGGCTCGGACCCCTCCACCTCCAAGTAATCGTACTTTTCCTCCGTCTGGAAGTCTGTAAAAATGATGGAGATGGTGTCTCCGGGATCAGCAAGTATGGTCCACGTACAGTCCGCACTATTGTAATATTCACTCGGGAAATTGGGACTCGTAATGATGCCACTTGAACCCCTCAGAGTATCACCACATGTGTCCTCAGCTCTGCAGATGGGCACTGGGAAGTCCCATACGGCGGCATTGCCAGCATTGGTCACACAGGTGAGCTGAGGATGGCCGTCCAGCACATAGCCGGTTACACAGCTGTAGCGGATCTTGTCGCCTACATTAAAGCGCGTCCCATACAGGATGCCTTTGGGCGGGACGCCGGGGTTCCCACAAGAACTGCTCTGCAATTCTTCATAATAGATTTTAAAGCCGTGTGCGCTCACGGCGAAGTCACTGGTGAGTCTCAGGGAGAATACAGATCCAGTGCTCGTGACGGGAGGAGGGATTTGGAAACCCGTTAACCTCGTCCTGAAGTTAGCTGGATGCGGGTGTCCATCGTAGAGGGATAAAAAGTCATAGTCCTCCTCCACTGCGAATGACTGAAAGACTATTTGAATTCGGTTGCCCTCCTCTGCTACAATAACCCATGTACAGTTTGCCCCGTTCTGATATCCGTATGGAAAACCAGGGCTTTCAATGGTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261122 True 1510 lncRNA 0.48 10 454492 657177

Neighbor

gene id symbol gene type direction distance location
CI01000054_00195914_00197098 NA coding downstream 257273 195226 ~ 197219 (-)
CI01000054_00188121_00191695 NA coding downstream 262534 187797 ~ 191958 (-)
CI01000054_00147623_00148143 NA coding downstream 306237 147591 ~ 148255 (-)
CI01000054_00094396_00130159 NA coding downstream 324307 94260 ~ 130185 (-)
CI01000054_00888859_00895223 LRRC14B coding upstream 231271 888448 ~ 895223 (-)
CI01000054_00898039_00902381 NA coding upstream 240365 897542 ~ 902381 (-)
CI01000054_00924015_00926256 GATAD1 coding upstream 266557 923734 ~ 926256 (-)
CI01000054_00929337_00955240 ANKIB1A coding upstream 271955 929132 ~ 955674 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding upstream 307465 964642 ~ 970121 (-)
G230085 NA non-coding downstream 63749 390527 ~ 390743 (-)
G230073 NA non-coding downstream 156324 297937 ~ 298168 (-)
G230063 NA non-coding downstream 198877 255323 ~ 255615 (-)
G229995 NA non-coding downstream 350922 103288 ~ 103570 (-)
G229994 NA non-coding downstream 356470 97733 ~ 98022 (-)
G230150 NA non-coding upstream 504 657681 ~ 670511 (-)
G230305 NA non-coding upstream 196265 853442 ~ 853773 (-)
G230308 NA non-coding upstream 200159 857336 ~ 857561 (-)
G230311 NA non-coding upstream 203744 860921 ~ 861246 (-)
G230148 NA non-coding upstream 206781 863958 ~ 886225 (-)
G230178 NA other upstream 528356 1185533 ~ 1230135 (-)
G230923 NA other upstream 2180060 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 2196964 2857402 ~ 2860573 (-)
G230908 NA other upstream 2400471 3057648 ~ 3063343 (-)
G231645 NA other upstream 3324670 3981847 ~ 3982823 (-)

Expression


Co-expression Network