G229717


Basic Information

Item Value
gene id G229717
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 860600 ~ 861220 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU260679
TTTAAAATACAGCATTCTGTGCAGAATTTAAATGTGTCCGATACCTTTTGTGGTCTGAGCCGACTCGCAGATATGATCCGCTCTGTGCTCTCGTGTCCCTGGGCCAGAGCAGACAGTGTTCACGCTGCGGCGGTTCACGTTATACTAACGCGAAAACGGACTTCATTCACATCAATGGAAAGCATATCTACACTGTCTGAATCGTTCCCTATCCTCTATGTAGTGCACTATGTGACATTCACCATGTAGAAACTAGTAAATGTGTGAACAAATGACCGATTTCAGCCGCAGCTTCAGTGTCTGTTTATAGTATAGGAGGGGGCGGGACTTCAGATTCTAGAGAGCATTTGATTGGACAGAAGATTTGATGAGAAGCTGAAGTGCGATGTGATGTCATGAAAATCCTTTATCCATTTTAGCGGAAGTGAGAGACTGTAAGTTTTGAATGCTTATATCTCCTAAATGCGAATTTTGTCATTGTTTTGGAACACACCAGCTTATTCATAACACTAAGGCTAACATATTAATACTAAATGCTAAAAAACTTAAGTTTTGATTTCAGGGGGACTTTAAAAATCTTTAAATCATTCAGTGGCAGACACAGACACATGCAATTTATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260679 True 621 lncRNA 0.40 1 860600 861220

Neighbor

gene id symbol gene type direction distance location
CI01000054_00666830_00754317 CSMD3 coding upstream 106283 666392 ~ 754317 (+)
CI01000054_00637123_00665809 NA coding upstream 194471 636873 ~ 666129 (+)
CI01000054_00612177_00613764 NA coding upstream 245721 610335 ~ 614879 (+)
CI01000054_00390853_00579795 CSMD3 coding upstream 280805 390853 ~ 579795 (+)
CI01000054_00248538_00251489 NA coding upstream 608486 247993 ~ 252114 (+)
CI01000054_00869317_00877277 RAD21B, RAD21 coding downstream 5906 867126 ~ 878129 (+)
CI01000054_00879731_00882536 MTERF3 coding downstream 18511 879731 ~ 882597 (+)
CI01000054_00885259_00886020 NA coding downstream 24039 885259 ~ 886020 (+)
CI01000054_00916253_00919736 NA coding downstream 55033 916116 ~ 919986 (+)
CI01000054_00992036_01004247 NA coding downstream 130816 992036 ~ 1004392 (+)
G229682 NA non-coding upstream 488668 371630 ~ 371932 (+)
G229670 NA non-coding upstream 511713 302855 ~ 348887 (+)
G229638 NA non-coding upstream 673572 184874 ~ 187028 (+)
G229637 NA non-coding upstream 762578 97764 ~ 98022 (+)
G229630 NA non-coding upstream 772218 88152 ~ 88382 (+)
G229736 NA non-coding downstream 56769 917989 ~ 918274 (+)
G229847 NA non-coding downstream 109359 970579 ~ 976960 (+)
G229848 NA non-coding downstream 117483 978703 ~ 981912 (+)
G229849 NA non-coding downstream 122380 983600 ~ 985153 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 365115 1226335 ~ 1230329 (+)
G229760 NA other downstream 405130 1266350 ~ 1273750 (+)
G229936 NA other downstream 535860 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 717215 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 789740 1650242 ~ 1666115 (+)

Expression


Co-expression Network