G230145


Basic Information

Item Value
gene id G230145
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 885254 ~ 888159 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261161
TTTGAAGACTTTTGTCAGAAAGGACATTTTAATAAGTATAAGGACTTTTCACATAATACATTTTCTCTTAAATACAAGACACCAGACATCACATCAAAGCGGAGCTTCAGCCTCATCACACTCATCCTACTTCTTTGCCCACTCCGCTTTTTCCTTATTTTCACGGACAACCTCCTCCAGATATGGCTCAAGGTAAGGAACATCCTCCTCATATTTAGTCCACTGGTCCTTGGGAAGAATCTGTTGCTTCATGGTAAGATCCAGAGCTCTCTTGATGCGGAACATCCTGTCATTGTAAACCGGTTCTGGAAGCCGACGAACGGCCTCTTTCACATTACTGTCCTCGTAGATGGTGTCATCCCGCATCAAACCAAGTTTGTTGAAACCGCATGCGTTGTAGTACCACTTTTTGAAGCCCACCAGGAGCCTGCCGGTTGCAGCTGGTGCCCTCGACGCCATTTCTG
>TU261162
CCAGATACTTACAGTATCTGTACTTTCACTTAAGTATAATTTGAGTATTTTATTCACCCCCGGTTCTTTCTCACCTCCTCATATTTAGTCCACTGGTCCTTGGGAAGAATCTGTTGCTTCATGGTAAGATCCAGAGCTCTCTTGATGCGGAACATCCTGTCATTGTAAACCGGTTCTGGAAGCCGACGAACGGCCTCTTTCACATTACTGTCCTCGTAGATGGTGTCATCCCGCATCAAACCAAGTTTGTTGAAACCGCATGCGTTGTAGTACCACTTTTTGAAGCCCACCAGGAGCCTGCCGGTTGCAGCTGTACAAGGACAGGAACAAATGACTTAATAATGTGGCGTTTATGGTGACTTACAAGTGTTGTTTGGGTTATTATAGCAGAAAAATCACTGGTAAACTGTCACAGCTGACATGAGATTCAGTTAACGGTCTCTACACATCAGAGAGTGAATCACGGACCATTTATTTATCTCTAATACTAAGAACACACACACAAAAACAGTTATTACAAGCGATGAGGGAATGTACACACATTTCGACGGGGACACAGTAGAGGACATCAGAGCTTCACATGACAAAACTAACAACTGCGTCAACAAACAGTCATTCTAACCGCACAGAAAGGAGGCGGGCTCTAAAATAACGACAACAAATTAATTAGCTCGCAATTTTAAAAAAATCTCACACAAATAACACATTTTACCTGGTGCCCTCGACGCCATTTCTG
>TU261160
TTTGAAGACTTTTGTCAGAAAGGACATTTTAATAAGTATAAGGACTTTTCACATAATACATTTTCTCTTAAATACAAGACACCAGACATCACATCAAAGCGGAGCTTCAGCCTCATCACACTCATCCTACTTCTTTGCCCACTCCGCTTTTTCCTTATTTTCACGGACAACCTCCTCCAGATATGGCTCAAGGTAAGGAACATCCTCCTCATATTTAGTCCACTGGTCCTTGGGAAGAATCTGTTGCTTCATGGTAAGATCCAGAGCTCTCTTGATGCGGAACATCCTGTCATTGTAAACCGGTTCTGGAAGCCGACGAACGGCCTCTTTCACATTACTGTCCTCGTAGATGGTGTCATCCCGCATCAAACCTATATGACATGAGGCAGAAAGTAGTACGTTTGCATACTATATATTGTTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU261161 False 464 lncRNA 0.46 4 885254 888159
TU261162 False 736 lncRNA 0.42 2 885254 886094
TU261160 True 423 lncRNA 0.42 2 885802 888159

Neighbor

gene id symbol gene type direction distance location
CI01000054_00195914_00197098 NA coding downstream 688035 195226 ~ 197219 (-)
CI01000054_00188121_00191695 NA coding downstream 693296 187797 ~ 191958 (-)
CI01000054_00147623_00148143 NA coding downstream 736999 147591 ~ 148255 (-)
CI01000054_00094396_00130159 NA coding downstream 755069 94260 ~ 130185 (-)
CI01000054_00888859_00895223 LRRC14B coding upstream 289 888448 ~ 895223 (-)
CI01000054_00898039_00902381 NA coding upstream 9383 897542 ~ 902381 (-)
CI01000054_00924015_00926256 GATAD1 coding upstream 35575 923734 ~ 926256 (-)
CI01000054_00929337_00955240 ANKIB1A coding upstream 40973 929132 ~ 955674 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding upstream 76483 964642 ~ 970121 (-)
G230311 NA non-coding downstream 24008 860921 ~ 861246 (-)
G230308 NA non-coding downstream 27693 857336 ~ 857561 (-)
G230305 NA non-coding downstream 31481 853442 ~ 853773 (-)
G230150 NA non-coding downstream 214743 657681 ~ 670511 (-)
G230108 NA non-coding downstream 228077 454492 ~ 657177 (-)
G230328 NA non-coding upstream 26976 915135 ~ 915357 (-)
G230238 NA non-coding upstream 105233 993392 ~ 996451 (-)
G230335 NA non-coding upstream 117107 1005266 ~ 1005502 (-)
G230336 NA non-coding upstream 127564 1015723 ~ 1019141 (-)
G230341 NA non-coding upstream 132515 1020674 ~ 1020880 (-)
G230178 NA other upstream 297374 1185533 ~ 1230135 (-)
G230923 NA other upstream 1949078 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1965982 2857402 ~ 2860573 (-)
G230908 NA other upstream 2169489 3057648 ~ 3063343 (-)
G231645 NA other upstream 3093688 3981847 ~ 3982823 (-)

Expression


Co-expression Network