XLOC_009896 (si:dkey-7f3.14)


Basic Information

Item Value
gene id XLOC_009896
gene name si:dkey-7f3.14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23923746 ~ 23924845 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019743
CCGCTGTTGATTCACAATTTAACTTCAGATGGGACAAATTGAGTTGAAACACACCAACGCAGactaaaactaaaaattaTGAAGATTCTCCTGGTTATTACATTGGCGATGTGTACAGGTTGCCAAGCCAACCTTTTCGATGCTGATGAACCCAAGCCACAACTAAAGTTAGCTGATGTATTCAGGAGCTTCGTTGACCAAGCCAGACGCACTGCAGAGGAAACCATTGAGAAGATTCAGACTTCCCAAGTGGGACAAGAACTCAATCAGCACACCACCAACCTGAAGGAAACGATGGATCCTCTGATGACCCAAATCACAGAAGGTGCTGACATGCTAAAGAATCGTATAGAAGAGGAAATGAGCGTTGTAAAGTGTGCACTAAAGCCCTACATTGAAGCTGTCACCGATCCATTTGAGAAGGCAGCAAATCACATGAGAGAAGCTCTGAAATTTGAGAATCTGAAGGGGAGAGAAGTGAAGAGCTGAAAGAGAGTCTGGAGAAAAATGCAAGAACTGAAGACTTTCATAACTGCAATAACAATTGCCCTTTTCATCAACACAGAGTTGTACTAGAATCTTATTTGTTGTATATTTAGAAAGCAATGACCTGTTGAGatgtataatgtaatgtaatgtataaaaTGTGCCTGCTAAACTAGTATTGCTGTGTGGTAAATTAGTAAGCCCAATAAATCCTCCAGAAAAGTATAAATC
>TCONS_00019744
ATGTATTTTATTCACattaTATTATTTGAACATATATTATTGATATCTGCAGGTTGCCAAGCCAACCTTTTCGATGCTGATGAACCCAAGCCACAACTAAAGTTAGCTGATGTATTCAGGAGCTTCGAAACCATTGAGAAGATTCAGACTTCCCAAGTGGGACAAGAACTCAATCAGCACACCACCAACCTGAAGGAAACGATGGATCCTCTGATGACCCAAATCACAGAAGGTGCTGACATGCTAAAGAATCGTATAGAAGAGGAAATGAGCGTTGTAAAGTGTGCACTAAAGCCCTACATTGAAGCTGTCACCGATCCATTTGAGAAGGCAGCAAATCACATGAGAGAAGCTCTGAAATTTGAGAATCTGAAGGGGAGAGAAGTGAAGAGCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-186 No description available

Ensembl:

ensembl_id ENSDARG00000095050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019743 False 717 mRNA 0.40 4 23923746 23924845
TCONS_00019744 True 396 mRNA 0.41 4 23924040 23924617

Neighbor

gene id symbol gene type direction distance location
XLOC_009895 apoa4b.2 coding upstream 878 23921610 ~ 23922868 (+)
XLOC_009894 apoa4b.1 coding upstream 7483 23913943 ~ 23916263 (+)
XLOC_009893 gtpbp10 coding upstream 21307 23891443 ~ 23902439 (+)
XLOC_009891 si:dkey-7f3.9 coding upstream 87824 23811554 ~ 23835922 (+)
XLOC_009890 rab13 coding upstream 114135 23796612 ~ 23809611 (+)
XLOC_009897 apoa4b.2 coding downstream 22351 23947196 ~ 23948538 (+)
XLOC_009898 apoeb coding downstream 35899 23960744 ~ 23963461 (+)
XLOC_009899 apoc1 coding downstream 47281 23972126 ~ 23973721 (+)
XLOC_009900 apoa2 coding downstream 54133 23978978 ~ 23980354 (+)
XLOC_009901 apoc2 coding downstream 59334 23984179 ~ 23994642 (+)
XLOC_009889 CR533578.1 non-coding upstream 316394 23607231 ~ 23607352 (+)
XLOC_009875 NA non-coding upstream 1227250 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 1344420 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1594718 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1596244 22323766 ~ 22327502 (+)
XLOC_009902 NA non-coding downstream 94263 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 273634 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 591247 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 640889 24565734 ~ 24573801 (+)
XLOC_009910 NA non-coding downstream 909930 24834775 ~ 24897111 (+)

Expression


Co-expression Network