G230238


Basic Information

Item Value
gene id G230238
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 993392 ~ 996451 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261278
AAAAATTACTGTATTGTTTGCTTATAATGAACCCAAAATATGTTGGAAATGAACATTTATTAATAAGTTTAATGAATAACAATTAAACAATAAACATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAGTAATTATGTCTGATTTTTAATTTCCAACCTATTTTAACATGCTTTTAACCCAACTATTGTTTAAAAATGACTGTATTACTTGCTTAAAATGAACCCAAAGTAAAATGAACCTAAAATTTTAAACAATAGTTGGGTTAAATAAAACTACCTAACAGGTTGGGCAAACATTTAATCCAACCACTGGGTTAAAACAACCCAACCACTGGGTTTTTCTCCATTTTAAACCCAACTTGGTTTGTTTTTAACCCAGCATTTTGTGTATTTACTACTCATTTATGCTTATTTTTCATTATATTTTCACCTTCTCAAGGTATTATTTGATGTTTGTTGTCTTCAGTTGTTCTTCAAATGGTCCTATAAATGTGACAAGATATTTTGTACTCGTTTGTGGTTAGATATTGGACACCTGCCATGTACTGCAGGAGTGACGATGTTCTCAGAATTTGTTGCTCATTTGAACAAGATGTATCTTTCCTGCAATAATATTTTGTACAACGTAAGACTTTTGATATTTGAAATGTGCAAGCTTTCCAATTCCTGTTGATCCAAAAAGGTGTTAAACCCACATCTTGCGTTGTTAATGTTAACTGTCACAGGACCAGTCACGAAAACATACACCACTGACACAATGGAGAGTTCAGTCTGACCTTTCTTATCCTACACTTAAGGTATATAACTGACCTCGGTCTGTGTTAGCCTCACTTCTTCTGCTTCTGACTTCTTGCTCTCTGCTATTTTTGCGCTCCAGCCTTTTGATATCTATTGTAATACTCAGAATAGACTTTTGATTGCTGGACCTCTGGTCTTTTGTATCAACAATGTATTTATGTATTAAATTTGCTTATCATTTATTCGTTATTGATTATTCATATTCTTCCATTTCAGTTTTCATCGACTTCTTCGACTGCCTGGATCTCATTGCATCAATTATATAATGCGGTTTGTTTAAAAGTATCTAATTCAATTTGGAATATCAATTTCTCACTCCATTTTTTCAGATCATGACGAAAAATTGTTTCTCAGTAGTCTACGCATGTAGTTTCTCTATTTATCTCATCTATTGGTTGCTAAATAAATATCAGCTTCAGATAAAGAGATGGCTAGTGCTGTACGACAAACATTGTGTTAAAAAAAGAAATGTAACACTTTATTTTGATAGTGCACTTTAGATAAGTAACTTTACAACTACACATCAACTAACTCTTAAGAGTATTAGTAGACTGTTTGGTTAGGGTTAGTAGAATAAGTTGACATGTATATGCAAATTTACTTGTAGTTAATGTCTAAAGTGGGTTATTGAAATAAAGTGTAACCAAAAGAACAATCAGCATCGAATCTGAGGCTCAGTAACTGATGACTTAAAAATGGAGCCCGCTTCCTCTACCTGCACAAACTTCTCCTTTAAGTGTGTGCAATTGACAAATAACAGCAACAAAATGGCTGTGCTGTCTTACCAGAGTACAAAACTTTTATATATTCACATACACTCTAGTGACTTTGAAAGTACCTTGAACTATTACTGCAAGTGAATTCACCTGATATTTTATACTAACCAACAATTAGAGGATTAGAACAGGAAAGCACTCTTTAATTGTAACTATATAAACACATATTGTATACAGCATCTATATGTGGGTGTATATGTTTGTTTGAAGCTGTTTTACCAGGTATAAGATGGCAAACGAGAGGGTCGCCGTGTTGACATGGCAGCAGAGTGTACGTGTTCCAGACATCTTTCTCTTCGACTCTTTCACAATGTGACAAACGAGCTGAAACACTCAGTACCAAACACATGAATCCTCCCTGCTGTTACCGACGAATACGCATGCACTTGTAGGTTCCTGTGTGGTGGTCAGGGCTTCCTGTGTACTTTCCGAGAACTTCACGAATTATTTTTATCATCATCTTAGGCTGATTTTAGTGATTTTTATCATGAGTTACACCATGAGATTCTACACTTTAAATTCGTAGAAGGATGCATCACATTATTTGATGAACAACTCTACATAAAAGATAAAATTAAACATTGATAGTGAGAAATGACTAACATATTTATGGCCAAACACACTCTAAAAAATCTTATTTTTTCTACCCAAGTCCTGGGTTGAGACTTTTGAGTCATTTTTTTGGGTTTTCCCAGTGTTTGGATAGTTTTTGTTACTCAGCTCCTGCGTCAGACATAACCCAGGGGTTGAGTTATTTATCACGTTTTTTGCGGCCTCTTCAGGAGAGAGCGGTGCAGCTGCATGTCTTCGGTAAAATACATGTTTGTGTATGTTTTATTTTATCTAAAAATTCGTTATTGTTCTGTATATCGTTTAATTTTATGCAAAGCAACATAAAATATGTTCTCAGAGTTGTACACTGATTATTTATGGACAGGTTATGGAGTCAGTTACAGCATTTTTCGGCTACGAGTGAAACGCAAGCGGCGGTCTGTAGTTAGCAGTTCCCCCGCTGAACGCGAGTCATCTCCGGCACGAGATCCAGTGCCGTTACGGTGGAAACAGGACAACAGAGACCGGTCGATAACACTTGAATTACTTATAAATGTTTAACTTTTACTTCTAATATTTGTTAGACGAGCTTAAATGTAGGCAATATGTATTAAAAACGTATAAAATATGCTATAATATAAAATATGATCAAAAATAAAGGAATTATCATGCAAACCAGTGGCTGTGTGGAGTATTTAAAAAAGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261278 True 2857 lncRNA 0.34 2 993392 996451

Neighbor

gene id symbol gene type direction distance location
CI01000054_00979998_00989171 TCEB3 coding downstream 4221 979998 ~ 989171 (-)
CI01000054_00974025_00979306 PITHD1 coding downstream 14086 973900 ~ 979306 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding downstream 23271 964642 ~ 970121 (-)
CI01000054_00929337_00955240 ANKIB1A coding downstream 37718 929132 ~ 955674 (-)
CI01000054_00924015_00926256 GATAD1 coding downstream 67136 923734 ~ 926256 (-)
CI01000054_01115294_01116274 GPR3, GPR6, GPR186 coding upstream 118242 1114693 ~ 1116822 (-)
CI01000054_01151083_01156699 FAM83HB coding upstream 154273 1150724 ~ 1158172 (-)
CI01000054_01203148_01209012 PPT1 coding upstream 206454 1202905 ~ 1209135 (-)
CI01000054_01246516_01250511 KLHL43 coding upstream 248430 1244881 ~ 1251249 (-)
CI01000054_01257527_01259314 NA coding upstream 261076 1257527 ~ 1259314 (-)
G230328 NA non-coding downstream 78035 915135 ~ 915357 (-)
G230145 NA non-coding downstream 105233 885254 ~ 888159 (-)
G230148 NA non-coding downstream 107167 863958 ~ 886225 (-)
G230311 NA non-coding downstream 132146 860921 ~ 861246 (-)
G230308 NA non-coding downstream 135831 857336 ~ 857561 (-)
G230335 NA non-coding upstream 8815 1005266 ~ 1005502 (-)
G230336 NA non-coding upstream 19272 1015723 ~ 1019141 (-)
G230341 NA non-coding upstream 24223 1020674 ~ 1020880 (-)
G230342 NA non-coding upstream 33170 1029621 ~ 1029829 (-)
G230189 NA non-coding upstream 59099 1055550 ~ 1057442 (-)
G230178 NA other upstream 189082 1185533 ~ 1230135 (-)
G230923 NA other upstream 1840786 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1857690 2857402 ~ 2860573 (-)
G230908 NA other upstream 2061197 3057648 ~ 3063343 (-)
G231645 NA other upstream 2985396 3981847 ~ 3982823 (-)

Expression


Co-expression Network