G230336


Basic Information

Item Value
gene id G230336
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1015723 ~ 1019141 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261382
TAGCACTTGCCGAGTCAGTGAATGTTTGCCCGTGAGTTACGTGTGTGTGTATGTGTGTGTTGTGTCTGCGTATGTGTGTGCTTCATGAAGTGTTTTATTTGAGAAAATAATCAAGCATTCACACCTACAATGTCGTCTTGCGACCTGCCATCAGTGAAGACAATACCGATCTTTGCCACTCCAGGTCTGGCGCCCTGGTTAGGAGTGAAGCTGTTTTCCACTATGAAATTGATGGCCTGGCCAGTCATGGTTCCCCTCTCCATATAGTCCATCTTTTTCACAGCATCTTTCAGGGCTTTTTTGTTGTTGTAGCGTCCCAGAGGGAACTCCTGCTTCACAGAGCTGGAATACTGCACCAGTCCCACATGGGTGTTGGTTTCTGACACGTCCAGTTTGTCGATGATCAGGTTGATCCATTTCTTGACCAGCTCAAAGTTCTCTGGTCTCACACTCTTGGACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU261382 True 460 lncRNA 0.47 2 1015723 1019141

Neighbor

gene id symbol gene type direction distance location
CI01000054_00979998_00989171 TCEB3 coding downstream 26552 979998 ~ 989171 (-)
CI01000054_00974025_00979306 PITHD1 coding downstream 36417 973900 ~ 979306 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding downstream 45602 964642 ~ 970121 (-)
CI01000054_00929337_00955240 ANKIB1A coding downstream 60049 929132 ~ 955674 (-)
CI01000054_00924015_00926256 GATAD1 coding downstream 89467 923734 ~ 926256 (-)
CI01000054_01115294_01116274 GPR3, GPR6, GPR186 coding upstream 95552 1114693 ~ 1116822 (-)
CI01000054_01151083_01156699 FAM83HB coding upstream 131583 1150724 ~ 1158172 (-)
CI01000054_01203148_01209012 PPT1 coding upstream 183764 1202905 ~ 1209135 (-)
CI01000054_01246516_01250511 KLHL43 coding upstream 225740 1244881 ~ 1251249 (-)
CI01000054_01257527_01259314 NA coding upstream 238386 1257527 ~ 1259314 (-)
G230335 NA non-coding downstream 10221 1005266 ~ 1005502 (-)
G230238 NA non-coding downstream 19272 993392 ~ 996451 (-)
G230328 NA non-coding downstream 100366 915135 ~ 915357 (-)
G230145 NA non-coding downstream 127564 885254 ~ 888159 (-)
G230148 NA non-coding downstream 129498 863958 ~ 886225 (-)
G230341 NA non-coding upstream 1533 1020674 ~ 1020880 (-)
G230342 NA non-coding upstream 10480 1029621 ~ 1029829 (-)
G230189 NA non-coding upstream 36409 1055550 ~ 1057442 (-)
G230343 NA non-coding upstream 42431 1061572 ~ 1061892 (-)
G230344 NA non-coding upstream 43472 1062613 ~ 1062914 (-)
G230178 NA other upstream 166392 1185533 ~ 1230135 (-)
G230923 NA other upstream 1818096 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1835000 2857402 ~ 2860573 (-)
G230908 NA other upstream 2038507 3057648 ~ 3063343 (-)
G231645 NA other upstream 2962706 3981847 ~ 3982823 (-)

Expression


Co-expression Network