G229872


Basic Information

Item Value
gene id G229872
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1058008 ~ 1059151 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU260862
AAACAACTCAAATGTTCACAGAATTACTGGGATAAAAGATTATAGTTTTGATAAGCACTGATGTCTACGGTAAATCACCTTTTGAAAGTAAATTGACGCTTCAAATAAAGATTGTATCATTTCTATCATTACACCAGTAGGTGGTGACATGTGACTGAATGGATTTGTCATTGAATCATCCATTCAAGAGTTTCTTTTAAAAAAACGCTGATTCATAATGTAACAAGTGAAGTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTAACCCTCATGTCGTTCTACACCCGTAAGACCTTCGTTCATCTTCAGAACACAAATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCAAAACCCGGAAGCGAGTTAGCATTTTAGGACTTCCGGTTCCATCGCCCTAAAGTCTATGGGTTTTTTGAATGGGTTTTTGCTAAATCGCATGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATCTATGACATAAAACACACCAGTTATAACCCGCTCGTGATTTTTTAAACCTTTATTGTGTCTTAAAAATGGCGGTTGCTAACAAATTGCTAAAAGGGACTACTTCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTCGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACAGCGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAATTGTTTTCTAAATAAAGTGTGAGGAAGCTTGGTGGTGGTCACGTTGATCCGCGACCATGGTGTGCTTTAGTCCGTTTATAGCCTACTGTTAGCTTTTTATATCTGACGACTTTATTTAGGCTTCAAAATGTATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAGTCTATGGGAAAAATGCATTGGCTTTCGATCGAGGGAACCCGTGCGCCGCTAACTTCCAGGTTGGCCTACAAAAACACGTCATCCCTGAGGTACTCTATTAAGATATTTTGATTAAATCCGATGGCTCAGTGAAGCCTCTATAGACAGCAATGCCTTTGAAAATCTCAAGATC

Function

NR:

description
PREDICTED: mitochondrial-processing peptidase subunit beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU260862 True 1144 lncRNA 0.37 1 1058008 1059151

Neighbor

gene id symbol gene type direction distance location
CI01000054_01042925_01056338 NA coding upstream 1447 1042891 ~ 1056561 (+)
CI01000054_01007770_01028369 MATN1, SESN2 coding upstream 29176 1007652 ~ 1028832 (+)
CI01000054_00992036_01004247 NA coding upstream 53616 992036 ~ 1004392 (+)
CI01000054_00916253_00919736 NA coding upstream 138022 916116 ~ 919986 (+)
CI01000054_00885259_00886020 NA coding upstream 171988 885259 ~ 886020 (+)
CI01000054_01087465_01101501 AHDC1, METTL24 coding downstream 27781 1086932 ~ 1101774 (+)
CI01000054_01103702_01106852 NA coding downstream 44290 1103441 ~ 1106852 (+)
CI01000054_01122882_01126143 NA coding downstream 63731 1122882 ~ 1126784 (+)
CI01000054_01133011_01143370 NA coding downstream 73860 1133011 ~ 1143612 (+)
CI01000054_01173734_01187846 KIAA0319L coding downstream 114583 1173734 ~ 1188947 (+)
G229865 NA non-coding upstream 44607 1013175 ~ 1013401 (+)
G229864 NA non-coding upstream 46880 1010721 ~ 1011128 (+)
G229849 NA non-coding upstream 72855 983600 ~ 985153 (+)
G229848 NA non-coding upstream 76096 978703 ~ 981912 (+)
G229847 NA non-coding upstream 81048 970579 ~ 976960 (+)
G229883 NA non-coding downstream 62941 1122092 ~ 1122351 (+)
G229806 NA non-coding downstream 84982 1144133 ~ 1144557 (+)
G229770 NA non-coding downstream 87139 1146290 ~ 1151146 (+)
G229831 NA non-coding downstream 102051 1161202 ~ 1161520 (+)
G229891 NA non-coding downstream 109460 1168611 ~ 1168843 (+)
CI01000054_01227110_01229796 EEF1A1L1 other downstream 167184 1226335 ~ 1230329 (+)
G229760 NA other downstream 207199 1266350 ~ 1273750 (+)
G229936 NA other downstream 337929 1397080 ~ 1407130 (+)
CI01000054_01578022_01579167 NA other downstream 519284 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 591809 1650242 ~ 1666115 (+)

Expression


Co-expression Network