Gene
RNA
| Item | Value |
|---|---|
| gene id | G230344 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 1062613 ~ 1062914 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU261392 | True | 302 | lncRNA | 0.40 | 1 | 1062613 | 1062914 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_00979998_00989171 | TCEB3 | coding | downstream | 73442 | 979998 ~ 989171 (-) |
| CI01000054_00974025_00979306 | PITHD1 | coding | downstream | 83307 | 973900 ~ 979306 (-) |
| CI01000054_00965111_00970121 | LYPLA2, LYPA2 | coding | downstream | 92492 | 964642 ~ 970121 (-) |
| CI01000054_00929337_00955240 | ANKIB1A | coding | downstream | 106939 | 929132 ~ 955674 (-) |
| CI01000054_00924015_00926256 | GATAD1 | coding | downstream | 136357 | 923734 ~ 926256 (-) |
| CI01000054_01115294_01116274 | GPR3, GPR6, GPR186 | coding | upstream | 51779 | 1114693 ~ 1116822 (-) |
| CI01000054_01151083_01156699 | FAM83HB | coding | upstream | 87810 | 1150724 ~ 1158172 (-) |
| CI01000054_01203148_01209012 | PPT1 | coding | upstream | 139991 | 1202905 ~ 1209135 (-) |
| CI01000054_01246516_01250511 | KLHL43 | coding | upstream | 181967 | 1244881 ~ 1251249 (-) |
| CI01000054_01257527_01259314 | NA | coding | upstream | 194613 | 1257527 ~ 1259314 (-) |
| G230343 | NA | non-coding | downstream | 721 | 1061572 ~ 1061892 (-) |
| G230189 | NA | non-coding | downstream | 5171 | 1055550 ~ 1057442 (-) |
| G230342 | NA | non-coding | downstream | 32784 | 1029621 ~ 1029829 (-) |
| G230341 | NA | non-coding | downstream | 41733 | 1020674 ~ 1020880 (-) |
| G230336 | NA | non-coding | downstream | 43472 | 1015723 ~ 1019141 (-) |
| G230346 | NA | non-coding | upstream | 847 | 1063761 ~ 1063961 (-) |
| G230356 | NA | non-coding | upstream | 48352 | 1111266 ~ 1111518 (-) |
| G230251 | NA | non-coding | upstream | 81260 | 1144174 ~ 1144586 (-) |
| G230380 | NA | non-coding | upstream | 105576 | 1168490 ~ 1168820 (-) |
| G230178 | NA | non-coding | upstream | 163509 | 1185533 ~ 1230135 (-) |
| G230923 | NA | other | upstream | 1774323 | 2837237 ~ 2837682 (-) |
| CI01000054_02857402_02860451 | NA | other | upstream | 1791227 | 2857402 ~ 2860573 (-) |
| G230908 | NA | other | upstream | 1994734 | 3057648 ~ 3063343 (-) |
| G231645 | NA | other | upstream | 2918933 | 3981847 ~ 3982823 (-) |
