G229746


Basic Information

Item Value
gene id G229746
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1314632 ~ 1331530 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU260724
ATTATAGTGATTTTTATTTTCAACATAACTAAACTTGAGATGACATACCTGCTGTGCCAAAACCCCCGAGTGCTGCTCCAAGCGTGGCTCCCAGAGAAGAAGATGGGTTAGCATTGAATCCAAGTGAGGTGCTTCCTGGCTGGGCGGAGCCTTGTGAAAACAGCGAGGAGCTCTGTGAGGAGGAGCTTGGGGAGCCACTCCCGTAAAAAGAGCTTCCTCCCAACGCCCCGCTCCCTTGCTGCCCAGGAGCCTGCTGAGAACTCAACGCACGGAACGCCCCGCTTGCTCCGCCACCAAGACCGGCATTAGCCCCACCTGCTGATGCGGCAGCAGCGGCCACTGCTGATGGGCTGATGATAACCGATGCAGGGGCCATAAGTCGAACTGGGCCACCACGAGCACCTGTATTCACCACAAGCGCTCCTGTCTGGTCATAATACGCAGCTGGAGCCAACACAGGATAACCAGGTACGCCGGCTGCCAGACTCTGCCCAAAAGCCAAGGCGGAATTCACAGCTGCTGCCGCTACAAGCTGCTCTGTCTGCTGACCCTGCTGTCCTTGACTGGGAGTCAGAGGTCGTTGGTTTCCACCTGCACGCATCACCTGCTGTTGGTTCTGCTGGGTCTGTGCTGCCGACTGCTGGTTGGCCGAGTTGGAGGGGGTGGCGGCCTGCTGCTGGAATAGGTTGGCAGGATACACACCCCATGGAGTCACACCATAGTACTGAGGGGGCATTACAGCTGGACCTAGAGTGGCGGCAGCAGCGAGGCCGGCGGCATATGGATCAGTGCCGGGCGGAGCAGTGCTAATGATGTACGGATTTGGTACAAACGCAGCTGGGGCCAAACCGATGTGTTGTTGTTGAGCTGCGGCGAGCGCGTACTGCTGCTGCTGGGCTGCCGTGAGCTGCTGCACTGCCAGAGCGCTGGGTCTCTGGAACAGCTGTTGAGGGGAATTGTAGTCGAACAGGCTGACGGTAGCAGCTGCGGAGTCGAGAGGCAGCTGGCCTCCAGTGTAATCAAACTGCAAAGTCTCCATAGAAACAGATTCCATGGGGTCCAGGGTCACATTTTGGGTTTCAACATTTGAGAACTCCTCTGCTGGTTTTGGCCCTGCACCTCCAGCCAGTTCTGGTCCACCCAAATCCACCTCTGGACCAGTCGGAGGGCAGTTACCAGGAGTACGGCTAAAATCCTTAACGTCCACATCAAGTCCATTCTGATTGGGCAGTCCATTGGGGTTATCCATAACATCTGGCTCTGTCTCTTTCAGTTCCTTCCGCTCAGAGTCAAATGTGGTTTTGGGTTTTTGTTCCACTCTTTTCTCAGGGTCATCAGCCTCCGAGTCTCTTGGACCAAATGCTCCTTTGCGCAAACATGAGTCCATTTTCTCAGCAGGGGAGGAGCTAAGAACATACTCCACCATAGACACGCCCAATCCACCGCTCTCAGAGCGTGGCGACAGCACAGATCCCGCCTCTCCGACGGCATGGAAGCCCTGACCTGGTCGGCGCTGCACCATGATTGGCTGGGACACCGAGTGATCAGAGGCTCCCCAAGCGCTGTCTCTCCACTGGTCCAGAAAGATCCCTTTTGGTCCATCTTTCCCTGAATCATCAGTTTCCCAGAATTTCTTCCCAGTTAGGAGCTGCTCTCCCATGGCTCGGCCCTCCAGTGCAAGTGCCTGGAAGTCATGGTTAAGCTCATCCATTGATCGTACCTGGTTGTCTGCATGAATGTTGTCACCAGTCGGCCAGCGGTGTTTGCAATTGTTGTAGCCGGGCTGGTCGCCATGTTGCCGCTGGAAGAAGTAATCCACCATGGCGTCATCTTGAGAGCGCCCTGCTCCCTGCGTAGGGGGAGGGGCCTGAGGAGAAGGGCCAGGTTGGGGGGTGTGGCCCGCAGCACTCAGCACCACAGGCATGCTGGGTAATGGCCTGTCAGGGGGAGGCAGTCTCAGGTGGGGGCTGAACGAATCCTGCCAGAGCACAGCTTTCCTCTTCAACACACACGCTACGCTCATTCCACCAGAGAAGGTGGAGGATGCGGATGGTGACGGATTTCAGCCCCGGTTCGCAGCAGCTCCCTAGCTTTTACACCGACAACATGGCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU260724 True 2113 lncRNA 0.57 13 1314632 1331530

Neighbor

gene id symbol gene type direction distance location
CI01000054_01231236_01238870 NA coding upstream 75563 1230789 ~ 1239069 (+)
CI01000054_01227110_01229796 EEF1A1L1 coding upstream 84574 1226335 ~ 1230329 (+)
CI01000054_01212755_01219670 NA coding upstream 93849 1212546 ~ 1220783 (+)
CI01000054_01190021_01201007 CAP1 coding upstream 112909 1190021 ~ 1201723 (+)
CI01000054_01173734_01187846 KIAA0319L coding upstream 125685 1173734 ~ 1188947 (+)
CI01000054_01353780_01357766 ZCCHC17 coding downstream 22038 1353568 ~ 1357859 (+)
CI01000054_01368287_01374709 DCLK3 coding downstream 36757 1368287 ~ 1375026 (+)
CI01000054_01378423_01387679 CYHR1, CYHR1.L, CYHR1.S coding downstream 46763 1378293 ~ 1388263 (+)
CI01000054_01535826_01544666 NA coding downstream 204296 1535826 ~ 1545550 (+)
CI01000054_01556797_01565522 FKBP9 coding downstream 225267 1556797 ~ 1565787 (+)
G229745 NA non-coding upstream 2661 1306370 ~ 1311971 (+)
G229919 NA non-coding upstream 9499 1304877 ~ 1305133 (+)
G229779 NA non-coding upstream 70291 1243774 ~ 1244341 (+)
G229891 NA non-coding upstream 145789 1168611 ~ 1168843 (+)
G229831 NA non-coding upstream 153112 1161202 ~ 1161520 (+)
G229933 NA non-coding downstream 59237 1390767 ~ 1391918 (+)
G229936 NA non-coding downstream 71644 1397080 ~ 1407130 (+)
G229822 NA non-coding downstream 82035 1413565 ~ 1413922 (+)
G229762 NA non-coding downstream 126264 1457794 ~ 1459261 (+)
G229792 NA non-coding downstream 136749 1468279 ~ 1472052 (+)
G229760 NA other upstream 40882 1266350 ~ 1273750 (+)
CI01000054_01578022_01579167 NA other downstream 246905 1578022 ~ 1579356 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 319430 1650242 ~ 1666115 (+)
CI01000054_01725792_01726688 NA other downstream 394139 1725627 ~ 1726793 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 958301 2289802 ~ 2330981 (+)

Expression


Co-expression Network