Gene
RNA
| Item | Value |
|---|---|
| gene id | G229936 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 1397080 ~ 1407130 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU260932 | False | 875 | TUCP | 0.45 | 8 | 1397080 | 1407130 |
| TU260933 | True | 435 | lncRNA | 0.45 | 2 | 1403174 | 1407130 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_01378423_01387679 | CYHR1, CYHR1.L, CYHR1.S | coding | upstream | 14911 | 1378293 ~ 1388263 (+) |
| CI01000054_01368287_01374709 | DCLK3 | coding | upstream | 28148 | 1368287 ~ 1375026 (+) |
| CI01000054_01353780_01357766 | ZCCHC17 | coding | upstream | 45315 | 1353568 ~ 1357859 (+) |
| CI01000054_01231236_01238870 | NA | coding | upstream | 164105 | 1230789 ~ 1239069 (+) |
| CI01000054_01227110_01229796 | EEF1A1L1 | coding | upstream | 173116 | 1226335 ~ 1230329 (+) |
| CI01000054_01535826_01544666 | NA | coding | downstream | 128696 | 1535826 ~ 1545550 (+) |
| CI01000054_01556797_01565522 | FKBP9 | coding | downstream | 149667 | 1556797 ~ 1565787 (+) |
| CI01000054_01568746_01575755 | SYTL1 | coding | downstream | 161616 | 1568746 ~ 1575755 (+) |
| CI01000054_01578022_01579167 | NA | coding | downstream | 170892 | 1578022 ~ 1579356 (+) |
| CI01000054_01589927_01595736 | NA | coding | downstream | 181838 | 1588883 ~ 1595857 (+) |
| G229933 | NA | non-coding | upstream | 11256 | 1390767 ~ 1391918 (+) |
| G229746 | NA | non-coding | upstream | 71644 | 1314632 ~ 1331530 (+) |
| G229745 | NA | non-coding | upstream | 91203 | 1306370 ~ 1311971 (+) |
| G229919 | NA | non-coding | upstream | 98041 | 1304877 ~ 1305133 (+) |
| G229779 | NA | non-coding | upstream | 158833 | 1243774 ~ 1244341 (+) |
| G229822 | NA | non-coding | downstream | 6435 | 1413565 ~ 1413922 (+) |
| G229762 | NA | non-coding | downstream | 50664 | 1457794 ~ 1459261 (+) |
| G229792 | NA | non-coding | downstream | 61149 | 1468279 ~ 1472052 (+) |
| G229763 | NA | non-coding | downstream | 65061 | 1472191 ~ 1474920 (+) |
| G229953 | NA | non-coding | downstream | 94185 | 1501315 ~ 1501896 (+) |
| G229760 | NA | other | upstream | 129424 | 1266350 ~ 1273750 (+) |
| CI01000054_01650242_01665628 | PLEKHO1A | other | downstream | 243830 | 1650242 ~ 1666115 (+) |
| CI01000054_01725792_01726688 | NA | other | downstream | 318539 | 1725627 ~ 1726793 (+) |
| CI01000054_02289802_02330591 | SLC25A13 | other | downstream | 882701 | 2289802 ~ 2330981 (+) |
| G230689 | NA | other | downstream | 1671372 | 3078502 ~ 3087392 (+) |
