G229764


Basic Information

Item Value
gene id G229764
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1513144 ~ 1514004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU260742
CTGGAATTGACCCATCCCGTCAGCTCATCCATGGTTTTATCCAGGCGGGGTTTGTCCTGCTCCACGTCCCAGGACCTCTGCGGGTCGCTCAGGTAGTCGATGAGATCCGGGCCGACCTGCAGCCGCCGGGTCACGTCCTTCTGCAAAACCTGCTGGTAAAAATAGTCCATGTTGTCATTTTCCTCCATCGGGACGCTTTGTGGTTAGTCCTCAGGTTGCGGCGAAACAATAACAACGGCAGAATGACGGTCAAGAGTCGCGTAAACAACGCGAGACACTGAAATGTGTACAAAGAGGAAGTCCAATACTGCGTTTAAAGACACCCTGAGGTCTGTTGTTAGTGCATTAGCAATGCAGTAACGGAAAATAAACAACTTCAACAAAAAGTTTTCCAGAAACGAAACGGTTGATCCCCCTAAAAAAGTGTTTTTACTAAATAATAAAGTGTGGGCGACCACCGGCGCAAAGAAATGTAAAATAAATACGCGTTGAGGCGCGTATAAAAACAGTGGAAATGTATCCGACCGAGTGCAGGCAGTCTCGGCTAACAATGTTAGCTTTAACCCTTAAGGTCGAGTATCCTGGGGCCTGCCGCCGGGGCTCTCTTCCCTCCTGGCCACCATTTCAGAAAAGCCCGCTTCAAGCCGCTCGCGGAGATGAATGGATAAGCTGCCGGTGCGCGCGCTGGTCTCAAAGCTCTCGCGTTTGCACTTAATCCAAAAATAATCCGCAGTTTGACAGCTGCCTTCTGAGCTCAGGACTCTCGCTTCGACCACGGCTACTGGACCGCCGGTAGCCGCAATACTGGAGTGTTGAATAGCAAACGAAGCCGAGGAAGAGTGATTGGGCCGAGGCCTTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU260742 True 861 lncRNA 0.51 1 1513144 1514004

Neighbor

gene id symbol gene type direction distance location
CI01000054_01378423_01387679 CYHR1, CYHR1.L, CYHR1.S coding upstream 124881 1378293 ~ 1388263 (+)
CI01000054_01368287_01374709 DCLK3 coding upstream 138118 1368287 ~ 1375026 (+)
CI01000054_01353780_01357766 ZCCHC17 coding upstream 155285 1353568 ~ 1357859 (+)
CI01000054_01231236_01238870 NA coding upstream 274075 1230789 ~ 1239069 (+)
CI01000054_01227110_01229796 EEF1A1L1 coding upstream 283086 1226335 ~ 1230329 (+)
CI01000054_01535826_01544666 NA coding downstream 21822 1535826 ~ 1545550 (+)
CI01000054_01556797_01565522 FKBP9 coding downstream 42793 1556797 ~ 1565787 (+)
CI01000054_01568746_01575755 SYTL1 coding downstream 54742 1568746 ~ 1575755 (+)
CI01000054_01578022_01579167 NA coding downstream 64018 1578022 ~ 1579356 (+)
CI01000054_01589927_01595736 NA coding downstream 74964 1588883 ~ 1595857 (+)
G229956 NA non-coding upstream 3345 1508570 ~ 1509799 (+)
G229811 NA non-coding upstream 4664 1508033 ~ 1508480 (+)
G229955 NA non-coding upstream 8421 1504324 ~ 1504723 (+)
G229954 NA non-coding upstream 9492 1503444 ~ 1503652 (+)
G229953 NA non-coding upstream 11248 1501315 ~ 1501896 (+)
G229958 NA non-coding downstream 2331 1516335 ~ 1518558 (+)
G229815 NA non-coding downstream 71333 1585337 ~ 1586014 (+)
G229967 NA non-coding downstream 90320 1604324 ~ 1604605 (+)
CI01000054_01639395_01647833 VPS45, VPS45.S non-coding downstream 134291 1639395 ~ 1648954 (+)
G229936 NA other upstream 106014 1397080 ~ 1407130 (+)
G229760 NA other upstream 239394 1266350 ~ 1273750 (+)
CI01000054_01650242_01665628 PLEKHO1A other downstream 136956 1650242 ~ 1666115 (+)
CI01000054_01725792_01726688 NA other downstream 211665 1725627 ~ 1726793 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 775827 2289802 ~ 2330981 (+)
G230689 NA other downstream 1564498 3078502 ~ 3087392 (+)

Expression


Co-expression Network