G230449


Basic Information

Item Value
gene id G230449
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 1735842 ~ 1739334 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261513
AAAGGTTCAGTGTTCTGTTTAAAGGGACAGAAAAGTCAGAGAAAGTGTGTGTAGGAAACAAGAACTACTGAAAACAAGTGTTTTTTTCTTCTTCAAATACATTCCAGTAGAAACAAACGTGGATAAAGAAGAATGAGATTTTAAAAAAAGCATATATTTGAATCTGTGAAGATGCAAGAGAAAAGTAATTGTAGAAAATTCTGCTTAAATTGTGAACTCCAGTTCTGTCCATTAGAATGATGAATTAATGCTATGACAAGTGGCCTAAACAATCTCTTAGGTCCACCGTTGTACCGTAAACACATGGTCAGTGTGCTCTAGCTATGTCAGTAAGGCAGAGGAGTGCTGTATTCCCTACAACCCCCTCCATGCTGTCTGTTACCTGAACTGCATGTCATATAAAGCTAGATCCTGTCCCATAACTGCATGCATAGATACTAATGTCAAGATCATGCATCAATGCTCATCTCAATGACTTCTCCCAGTTTACTCAATTCTTCAAAATAGTGGCAAGTCTGTACATGGCTGAGGTTAAGGTCACGTGTGAGACGACACTGATCGAATGATCAGACGAGAAAAATAATGCATGTTAAGTGTTTCATCGTGCCAGAAGGACCTTTGACCTATTGATCTCTATGGGGTGATGTGAGGACATAATCTGGTGAAAGATCATAGCCTTAAAGGGATTGTTCACCCAAAAAATACAATTCTGACATCATTTTCTCACCCTCACGTTGTTTCAAATGTGTATGGCTTTAATAGGGTCCATGACTTTCATTGTATGGATCACTGAGAAATATCAATCGTGTTCCACAGAAGAAAATTAGAGCAACAAAAATTACAGAATTTTAAAGAGGACCTATTATGCCCTTTTTCAAAGTTTTGATTTTGTTCTTGGGCTCTACTAGAATAGGTTTTCATGCTTGAATGTTCAAAAACACATTATTTTTCACATATTCTCCATTGTTGCAGCTCCTCTCTTCTCAGTCTGTCAGTAACGCTCTGTTTAGTTGCTGTCTCTATGTAGCCCCTCCTTCTGAAAAGCGCAGTGTGCTCTGATTGGTCGACTGGACCAGTGTGTTGTGATTGGTCAACCGCTTTGAGCATGTTTGGGAAAAGTCACACCTCTTACCATAACTGCAAGTTTCAACACACTACTAACTAACTCAATCAGGCCCCGCCCCTTTATTTTGCATACGCCTTAGCCGGAATTATTTAAATGAGGAATATAGTGACATGTTCGTTCCCAGGAGAAAACTCAAGACTACAATGGAGGCGTTTCAGAAACAGTGACACTGATATAGAGAATAACTCCCTTTGGACTGACATGGTGCTTATTAAAGGGGTGGTTGATTATGATTTCACTTTTTTAACTTTAGTTAGTGTGTAATGATGCTGTTTGAGCATAAACAACATCTGCAAAGTTACGATGTTTTCTTTTAAAGAATTCTGTTTAAGGACTACAACAAACGGCTGGTAGGGACTACAACAAGCTTCTTCCTGGGTTAGTGACATCACTAACCTCAAAATTTTCAGAGGAAGAGTTGTTGTAGTAGTGTGTTGTTAACATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTTAACGCTGGATTTGCACAAACGATTAACATGACGTCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATTCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCACGAGCTGTTAAAGCTCCACCCTCTTCTGGAAAGGGGGCTGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCAAAGACATTTTTAATGCTCAAGCAGCAACATTACACACTAAAGAAAGTTGAAAATGTAAATAAGCATAATAGGTCCTCTTTAATTTTTGAGTGAATTATCCCTTTAAATCTCAACTAATCGAGAGTCATATTTGGGGAGAAGACAGACTTCTTTTGACCCACTTATTGAACTGATGCACATGCAGAATGAGGAGATGGGCTGCAAGGCAGAGAGGCTGAGGATCAGAAAGAAGGCAATAAGATCAGCCTCTATAACTAAACTTGCCTGAACTACTCAAACTATTAACATGCACTTTAATGCTGGCTATTTAATCAAAGAATATTTTTATTTATTTGATGTTCTTGGGGTTTTTTTTGCATGGTGGGCTTCTGAGAGATGATGCAGTGGCAGGGTGCTGTCGCAGAAGAAGAGAGAGGGCCTGAGGGCCTCACATTTTTAAGTTCCTTCCTTCCTGAAATGCCAAGAGAAACCATGCAAGATAAAAATGACAGGAGATGATGCTTTGGTGGAAATACTGTCCGTCGGCCCATCATGCTGTTCTTTATAGCAATCTGCGAAGCCGTTTTCACAGAGGATATGTCAATGATAAATAAAGGAAGAGTACTGGATGCAGTACATTCATTGTGGCACAAGGAGTCTATTGCATCGGGCCAAAGTTTAAGGCCGAGAAAGAGAGTCCAAAAATCAAGTTCAGTTCACAATGCCCTGATTTCTTAGAAAAAAAGACAGAGAGAAAAATAGAACAGCTCTGGGGGCCTATTGATTATCAAAAACTCAAAAAAAATCAAGAAACAATATTGGCACAGAGACTTCCAAAAAGAAACACCATCAATGAAAAGGTAAAAGGAACTCAGTTTTGTAGCAGTCAAGTGATTCGTCCCCTCCTATTTTGGAAGACTGATAAAAAGCGATGGTCTCAGCTAAAACTCTGCCATCGAGTCCAAATGTTCAACACAGAACCTCAATAATGTCTTCATCCCTGTGAGGACGTTTCTCTAAAACTTTCCTGAATCAGTTGAAACAAAAAAGAAGAAAGATACTACAGGCACGTTAAAATAAAAACACTGCGGACATTGTGAAATATAAGAGCATAGTTTGCAAGGCGTAGTCTAGAAAAGTAGGCCAGAAGCCACCATCCACTGTGCAAAGGATGAACCCATGCAAGGATACAGCAGTTGTTTAGAGGAACTGTGCTAGGTTAGTGTAGGGAGGTATTTAGACTTTGGATGATTTGTCTGCTGCTGGCTGGGTCTCTGGGGGTCATTCCATGTTGCCACTGTCTGAGTGGGAGATATTAAGGGTGTTTGCTGAGGGGAACAGGTCACGTTGATCAGTCGGACTGTGGTAGTCAGAGGTCAAGTCCGGCTCCAGCAGGGACGACAGGGTGAAGTGGGACGAGCCCTTTTTCAGGCACTGGGAGTAGAAGTTTAGTAGCAGGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261513 True 3470 lncRNA 0.41 2 1735842 1739334

Neighbor

gene id symbol gene type direction distance location
CI01000054_01725792_01726688 NA coding upstream 9102 1725627 ~ 1726793 (+)
CI01000054_01706858_01711137 NA coding upstream 24592 1705732 ~ 1711250 (+)
CI01000054_01650242_01665628 PLEKHO1A coding upstream 69727 1650242 ~ 1666115 (+)
CI01000054_01639395_01647833 VPS45, VPS45.S coding upstream 86962 1639395 ~ 1648954 (+)
CI01000054_01634335_01637623 NA coding upstream 97920 1634335 ~ 1637922 (+)
CI01000054_01871659_01875753 NA coding downstream 132214 1871548 ~ 1876210 (+)
CI01000054_01879983_01965668 TRIO, TRIOA coding downstream 140649 1879983 ~ 1966159 (+)
CI01000054_02024879_02026284 NA coding downstream 285545 2024879 ~ 2027615 (+)
CI01000054_02096054_02105211 GNRHR1, GNRH-R coding downstream 356720 2096054 ~ 2105265 (+)
CI01000054_02195667_02196307 CHRAC1 coding downstream 456333 2195667 ~ 2196853 (+)
G229967 NA non-coding upstream 131237 1604324 ~ 1604605 (+)
CI01000054_01589927_01595736 NA non-coding upstream 146812 1588883 ~ 1595857 (+)
G229815 NA non-coding upstream 149828 1585337 ~ 1586014 (+)
G229958 NA non-coding upstream 217284 1516335 ~ 1518558 (+)
G230462 NA non-coding downstream 28089 1767423 ~ 1807305 (+)
G230463 NA non-coding downstream 118854 1858188 ~ 1971861 (+)
G230496 NA non-coding downstream 270668 2010002 ~ 2010436 (+)
G230500 NA non-coding downstream 276940 2016274 ~ 2018368 (+)
CI01000054_01578022_01579167 NA other upstream 153773 1578022 ~ 1579356 (+)
G229936 NA other upstream 328712 1397080 ~ 1407130 (+)
G229760 NA other upstream 462092 1266350 ~ 1273750 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 550497 2289802 ~ 2330981 (+)
G230689 NA other downstream 1339168 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 2169117 3848427 ~ 3914231 (+)
G231863 NA other downstream 2667818 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3883681 5608457 ~ 5634804 (+)

Expression


Co-expression Network