G230500


Basic Information

Item Value
gene id G230500
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2016274 ~ 2018368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261596
TAAAGAGAAGGCCTAAAGATTGTAAAGCAGTTCTATGACATACATGAGAGATGACATACTGGATAAAATACTTAAGAGAAAACACTCTGCATTTTCTAACTGGTGTGGTTATGTAATTATTGTGAATGGGTTAATGTCAGGAGACTAAAATATAGTATGACAGTGTGTTTTATACCCACAGGATAAAATATGCTTGAAATAACTGTAATGAATAGACAAGAAATGAATACTGTTATAAAGTCAAAGTCCCTTTAAGACAAGTCGTTTCACTCGGCGGCCATCTTTGAAACGCCTCTCGGCATTCAAGCGTAGCTCCTATCTCTTTGAATGGGGAAACATCAAATTCTCCAAAGCTGTTTGCCAAGCTTTCGATTAAATTTTATATTTGAAATCACAAATGAAATCTGACAACAACTGTCTCATAAATTTTGTTTTTAAACACTCGAATCATGACAAAAAAACGGTATTATTCAGGCTAGATCAAGCTAATGCGCACGCGCAGTTCTAAATGCGCGTCTCGCGTCTCATCTCGGAGGCGCGCGTCTGACTGTTTCTATAGGAACCGGAGCTTCTAACGGCCGCTGCAGTGACGCGATGACTTTACCAATCGGCGATTGGCTCTTATTTAGAAGGCGGGACTTATTCCGCGATATTGCGCGTTGCTCTTTCTCCCATTCAAAACAATAAGAGTGATGCGTCTTGTGTTATTCTATAGTCTTTGATAAAGTACAGAACACATCTGAAATAAGTGAACACATAAAACAGTCTCAAATAGTAGACCATCCCAGGGAAAATGGGCCGTCTGGTCAGTGTAATCTTGACCTGCTGCATGACAGCTGCACTGAAAGCAAGTCCAGATTTCCGCTGACAAGAAGCTCTTCATCATGAGATGTCAAACCCATCTCAATTACCATTTCTTCCTTTATATTTTGAAAGTGGTAAGGGCACATAAGCAGTACATTCAGAAACAGTTTCATCTCTGCTGATGACAGTCCACTCTCACTCTTGAAGAAAAGGTTCTATATAGAACCTTTTAGGGATTCCCATCTTGGAATCATTTTATGGATTTAGTTTTAATTCATTAACTTTGTTTTAATATATATGTTTCTTTTGGTCCGGACCAAAAAAGAAAATGATCAATTTAGTCCTGGTTCGCTTAGCTTATCATTTTTAACATCGAACCTAAAGATACAAAACAAAAAACAGCTTTTATGATGTATATTTCACAACGGACCTTGCTGAACATCCAAAACAATGCTGTGTTCTGGACTAAATGCGCTTGTTGTATGTGTGAACATATGATGGTATTTTTGCCAGCTGAGAACTCATGAAGAGCTTATAAAATGTGTAAAGGAGTCAAAACAGCACCAGGAATTCCTCCATTGCACACAAACAAAGATCTGCTGCAAGAAGACAGCGGTTCTGACACCTGTACCGAACTGTAATGGACAACATCGTGACTATGACGAAAAGAACCAGGTATGCTTGAGCATCGTGTCCTGTTTTGGTTTGTTTAAATGTCTTTGGTCCATGTTGCGTTCACATTTCAATCGAACCACACCAGAGTTCGACTGAGATGGACCAAGACCCCTTTGAATAAGTTGAACTTATTTTAACTTAAGCACCACGTTTTTAGAACGCTGTCATGCGCGTGATGCTGCAAAATACACAAGATGCGAGCGCAGTGGTTAAAGACGTCCGTCTACTGCATGTTTACATTGAAAAACAATGGAAAAGTAGCACAGTGGAATGGTAAAACGCATTCTGTGTGAATGGCCCCTAATACTGAATGTAATACAGTAAAATGAAATTAAGGTCTAAGTCAGCATGGCAAACGTTAAGAACATCAACTACAAGCTCTCACCTTGCACAGCCACAGACTTACAAGGACAAGTTTTCACATGACCTTCCCAGCTCAAACCTTCAAAATTCCTCAGATGTGTTATCACCACGTTCAATGAAAAATAAAACAACAGGGGAAAACAATAGAAAGCAGAGAGCCAAGACAAAGACACAACAATATCAGAGATGCTAGGTGGGAGGCAACAATTTACTTTGATACAATCCTGGATCCCTCCTGAGAACTTTACCACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261596 True 2095 lncRNA 0.39 1 2016274 2018368

Neighbor

gene id symbol gene type direction distance location
CI01000054_01879983_01965668 TRIO, TRIOA coding upstream 50115 1879983 ~ 1966159 (+)
CI01000054_01871659_01875753 NA coding upstream 140064 1871548 ~ 1876210 (+)
CI01000054_01725792_01726688 NA coding upstream 289534 1725627 ~ 1726793 (+)
CI01000054_01706858_01711137 NA coding upstream 305024 1705732 ~ 1711250 (+)
CI01000054_01650242_01665628 PLEKHO1A coding upstream 350159 1650242 ~ 1666115 (+)
CI01000054_02024879_02026284 NA coding downstream 6511 2024879 ~ 2027615 (+)
CI01000054_02096054_02105211 GNRHR1, GNRH-R coding downstream 77686 2096054 ~ 2105265 (+)
CI01000054_02195667_02196307 CHRAC1 coding downstream 177299 2195667 ~ 2196853 (+)
CI01000054_02225261_02226820 DLX5, DLX5A coding downstream 206159 2224527 ~ 2227071 (+)
CI01000054_02239241_02261796 NA coding downstream 219956 2238324 ~ 2261858 (+)
G230496 NA non-coding upstream 5838 2010002 ~ 2010436 (+)
G230463 NA non-coding upstream 44413 1858188 ~ 1971861 (+)
G230462 NA non-coding upstream 208969 1767423 ~ 1807305 (+)
G230449 NA non-coding upstream 276940 1735842 ~ 1739334 (+)
CI01000054_01639395_01647833 VPS45, VPS45.S non-coding upstream 367320 1639395 ~ 1648954 (+)
G230475 NA non-coding downstream 63657 2082025 ~ 2082459 (+)
G230606 NA non-coding downstream 87352 2105720 ~ 2108675 (+)
G230617 NA non-coding downstream 97068 2115436 ~ 2115817 (+)
G230622 NA non-coding downstream 103953 2122321 ~ 2122664 (+)
CI01000054_01578022_01579167 NA other upstream 434205 1578022 ~ 1579356 (+)
G229936 NA other upstream 609144 1397080 ~ 1407130 (+)
G229760 NA other upstream 742524 1266350 ~ 1273750 (+)
CI01000054_02289802_02330591 SLC25A13 other downstream 271463 2289802 ~ 2330981 (+)
G230689 NA other downstream 1060134 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1890083 3848427 ~ 3914231 (+)
G231863 NA other downstream 2388784 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3604647 5608457 ~ 5634804 (+)

Expression


Co-expression Network