Item | Value |
---|---|
gene id | G230622 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000054 |
NCBI id | null |
chromosome length | 13006764 |
location | 2122321 ~ 2122664 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU261756 | True | 344 | lncRNA | 0.43 | 1 | 2122321 | 2122664 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000054_02096054_02105211 | GNRHR1, GNRH-R | coding | upstream | 17056 | 2096054 ~ 2105265 (+) |
CI01000054_02024879_02026284 | NA | coding | upstream | 94742 | 2024879 ~ 2027615 (+) |
CI01000054_01879983_01965668 | TRIO, TRIOA | coding | upstream | 156162 | 1879983 ~ 1966159 (+) |
CI01000054_01871659_01875753 | NA | coding | upstream | 246111 | 1871548 ~ 1876210 (+) |
CI01000054_01725792_01726688 | NA | coding | upstream | 395581 | 1725627 ~ 1726793 (+) |
CI01000054_02195667_02196307 | CHRAC1 | coding | downstream | 73003 | 2195667 ~ 2196853 (+) |
CI01000054_02225261_02226820 | DLX5, DLX5A | coding | downstream | 101863 | 2224527 ~ 2227071 (+) |
CI01000054_02239241_02261796 | NA | coding | downstream | 115660 | 2238324 ~ 2261858 (+) |
CI01000054_02272856_02274337 | SHFM1, SHFM1.S, DSS1 | coding | downstream | 148525 | 2271189 ~ 2274545 (+) |
CI01000054_02289802_02330591 | SLC25A13 | coding | downstream | 167138 | 2289802 ~ 2330981 (+) |
G230617 | NA | non-coding | upstream | 6504 | 2115436 ~ 2115817 (+) |
G230606 | NA | non-coding | upstream | 13646 | 2105720 ~ 2108675 (+) |
G230475 | NA | non-coding | upstream | 39862 | 2082025 ~ 2082459 (+) |
G230500 | NA | non-coding | upstream | 103953 | 2016274 ~ 2018368 (+) |
G230624 | NA | non-coding | downstream | 1703 | 2124367 ~ 2124737 (+) |
G230632 | NA | non-coding | downstream | 9033 | 2131697 ~ 2132037 (+) |
G230634 | NA | non-coding | downstream | 10580 | 2133244 ~ 2133556 (+) |
G230659 | NA | non-coding | downstream | 56177 | 2178841 ~ 2179094 (+) |
CI01000054_01650242_01665628 | PLEKHO1A | other | upstream | 460756 | 1650242 ~ 1666115 (+) |
CI01000054_01578022_01579167 | NA | other | upstream | 540252 | 1578022 ~ 1579356 (+) |
G229936 | NA | other | upstream | 715191 | 1397080 ~ 1407130 (+) |
G229760 | NA | other | upstream | 848571 | 1266350 ~ 1273750 (+) |
G230689 | NA | other | downstream | 955838 | 3078502 ~ 3087392 (+) |
CI01000054_03848427_03914231 | NA | other | downstream | 1785787 | 3848427 ~ 3914231 (+) |
G231863 | NA | other | downstream | 2284488 | 4407152 ~ 4450730 (+) |
CI01000054_05608892_05634793 | RNF19B | other | downstream | 3500351 | 5608457 ~ 5634804 (+) |