G230778


Basic Information

Item Value
gene id G230778
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2479398 ~ 2479733 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261929
GGGACATAAAAGTGCCTGCAGCTGAAGAAACACAGTGCATAAAAATATATGAATCACCAGTTTCATGACAAGCATTTGAATGTTTTTCTAAAGCTGAAAGCTATTAAAAGCCGTTATCCATTCATTCATCCATTCTCTCTTTGCAGAGAGTGCATTCCATGAGACTTAAAAGACATTTTATTTCAACTATATTTTGAAAGCACTTTGGCCACGGAGGAGACTTGAACTGATGAGTCAGGTGATATGAAACTCTCAAGCGTTATTAGCCTTTTGCTCTGTGTCAAGAACATAGCTCCTTCAAAACATATGGTTCTGTTCGTCCTCTTGATTCTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261929 True 336 lncRNA 0.37 1 2479398 2479733

Neighbor

gene id symbol gene type direction distance location
CI01000054_02417068_02430580 PDK4 coding upstream 48082 2417068 ~ 2431316 (+)
CI01000054_02289802_02330591 SLC25A13 coding upstream 148417 2289802 ~ 2330981 (+)
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding upstream 204873 2271189 ~ 2274545 (+)
CI01000054_02239241_02261796 NA coding upstream 217540 2238324 ~ 2261858 (+)
CI01000054_02225261_02226820 DLX5, DLX5A coding upstream 252327 2224527 ~ 2227071 (+)
CI01000054_02500503_02511195 SGCE coding downstream 20770 2500503 ~ 2511195 (+)
CI01000054_02564258_02570248 NA coding downstream 83959 2563692 ~ 2570405 (+)
CI01000054_02589793_02592201 BET1 coding downstream 110060 2589793 ~ 2592926 (+)
CI01000054_02613166_02614884 TFPI2 coding downstream 133325 2613058 ~ 2615458 (+)
CI01000054_02652696_02685815 CALCR coding downstream 172963 2652696 ~ 2685833 (+)
G230777 NA non-coding upstream 1554 2477632 ~ 2477844 (+)
G230776 NA non-coding upstream 1869 2477294 ~ 2477529 (+)
G230775 NA non-coding upstream 2467 2476323 ~ 2476931 (+)
G230773 NA non-coding upstream 4580 2474602 ~ 2474818 (+)
G230759 NA non-coding upstream 41946 2436024 ~ 2437452 (+)
G230779 NA non-coding downstream 2398 2482131 ~ 2482368 (+)
G230780 NA non-coding downstream 6699 2486432 ~ 2486697 (+)
G230781 NA non-coding downstream 7290 2487023 ~ 2487256 (+)
G230782 NA non-coding downstream 12830 2492563 ~ 2492815 (+)
G230783 NA non-coding downstream 13163 2492896 ~ 2493128 (+)
CI01000054_01725792_01726688 NA other upstream 752605 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 817833 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 897329 1578022 ~ 1579356 (+)
G229936 NA other upstream 1072268 1397080 ~ 1407130 (+)
G230689 NA other downstream 598769 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1428718 3848427 ~ 3914231 (+)
G231863 NA other downstream 1927419 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3143282 5608457 ~ 5634804 (+)
G232558 NA other downstream 3513927 5993660 ~ 6041863 (+)

Expression


Co-expression Network