G230711


Basic Information

Item Value
gene id G230711
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2545634 ~ 2546398 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261857
ATTTAAAGTAATAACTATTGCTTTTTACACTGAAAAGAGTTCATTTAAATAAGAATTTAAATCAGTAAATTTTATATGATGTTGCTTAAATTGGTTGTTACAGACTTCAGCCAGCAGGGGGCAGATTTTACAGACCCCCCCATAATTAAAAAAACACTCCTGGAGTCTGGGACAAAGATGAGATGAAAATATCCAAGACCACGAAGTATCCATTAAAAAGATCCGCTGGATTTTACAGTGGAATGCCAAAAGGAAACGCCTCAATTCTTCAGATGTAGTTCTAGCTTTCCTTGAGGTAATTTCCCAGCAAGGTTCAACCAAACAAGCGGAGCAAATCCAGTAGAAGAAGAAAGAAAAAGCCTTAAGATCCTTGGTAAGACAAAAAAAGCATATTTCAGACTTACATTGACATGATGCTAGGTACGAAGTCACTGCAAGCAGCAACAGAATCCTGGTATCCACAAAGCTGAGCATGTCTAAACCGACATGCAGACTCCTTGTGCTGCAGTGCCCTGGTTTAACTCAAGCAGGCATACAGTTGTGGTATAAACTCCAAACTTAGCAGGAACCTGCTGCCGTGATGCTAGAATAATAAAGAGCAACCAGCCCTATTTATATGGCAGGAGGTTCCCTTGACTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU261857 True 640 lncRNA 0.40 2 2545634 2546398

Neighbor

gene id symbol gene type direction distance location
CI01000054_02500503_02511195 SGCE coding upstream 34439 2500503 ~ 2511195 (+)
CI01000054_02417068_02430580 PDK4 coding upstream 114318 2417068 ~ 2431316 (+)
CI01000054_02289802_02330591 SLC25A13 coding upstream 214653 2289802 ~ 2330981 (+)
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding upstream 271109 2271189 ~ 2274545 (+)
CI01000054_02239241_02261796 NA coding upstream 283776 2238324 ~ 2261858 (+)
CI01000054_02564258_02570248 NA coding downstream 17294 2563692 ~ 2570405 (+)
CI01000054_02589793_02592201 BET1 coding downstream 43395 2589793 ~ 2592926 (+)
CI01000054_02613166_02614884 TFPI2 coding downstream 66660 2613058 ~ 2615458 (+)
CI01000054_02652696_02685815 CALCR coding downstream 106298 2652696 ~ 2685833 (+)
CI01000054_02824071_02824355 NA coding downstream 277627 2824025 ~ 2824642 (+)
G230783 NA non-coding upstream 52506 2492896 ~ 2493128 (+)
G230782 NA non-coding upstream 52819 2492563 ~ 2492815 (+)
G230781 NA non-coding upstream 58378 2487023 ~ 2487256 (+)
G230780 NA non-coding upstream 58937 2486432 ~ 2486697 (+)
G230779 NA non-coding upstream 63266 2482131 ~ 2482368 (+)
G230798 NA non-coding downstream 34898 2581296 ~ 2581522 (+)
G230710 NA non-coding downstream 36013 2582411 ~ 2583773 (+)
G230802 NA non-coding downstream 40517 2586915 ~ 2587138 (+)
G230812 NA non-coding downstream 64998 2611396 ~ 2612378 (+)
G230707 NA non-coding downstream 86893 2633291 ~ 2689215 (+)
CI01000054_01725792_01726688 NA other upstream 818841 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 884069 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 963565 1578022 ~ 1579356 (+)
G229936 NA other upstream 1138504 1397080 ~ 1407130 (+)
G230689 NA other downstream 532104 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1362053 3848427 ~ 3914231 (+)
G231863 NA other downstream 1860754 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3076617 5608457 ~ 5634804 (+)
G232558 NA other downstream 3447262 5993660 ~ 6041863 (+)

Expression


Co-expression Network