G230978


Basic Information

Item Value
gene id G230978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2613035 ~ 2615473 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU262153
TAAATGCTTGTTTATTCAGGATTGATATAATGTGCCGTTACAAAGGCATGGGACACAACATGATTCGAATAAAATTTGATATAAAATATATATATTATATGTAAATTAGAGAAAAACCTGCCATTTTTAAGGCAACAGACAGTGACTGTTTTCATTTTTCATTCTTGCCCTTGTCAGGTTAAGTGTCACTAGCTTTCTGTAATGACTATCATGTTACTACGCCTAGACTTAGATGATACCTGCTGCCAATTATATATGTTCTTGCTGAAGAGAGGAACAGATTAAAGCTTTAGCATATTAAATAATGTTGGCAAATAATCATCAGTTAAACATTATGCTTTATCACTTAAACAGTGTTAGACTTATTGTATTTAACAATACAAATAATTAAAAATGGTAAATCCTTGTTTTACTGAAAATAAAAATGCACACAGGTATAAAAAATACATGAGAATAATAAACAAACTTTCAATAAACAAGCATTTTTAAAACAATACCATATATACACAGAGTGGGATGTGTATCCATTACTGTAAAATCAGTGCAATCATTTTTGTCAGTAAAACAGTGAGAATGACTTCATGAACAATTATTTGGCTGACTTCTCCTTTGGTGGCTGAGCCTTTGTTCGTTTTAAGTACTTTTTAGAAGCTTTTACTGATTTTTTCCTCCAGCGTTTGCTCCCTGAGAACAACAAAACACATGGTTAGACATTGAAAATAATGCTGTCCTATTGTCGTGATAATGACTTTCTCATATTAATTACAAACTAACCCAAAGCGATGAAACAAACCATTTTTACCACAAACATCAATGCAGCTTTCTTTGGAGATGAAGTTATTGCTGCTTCCTCCGCATCCCGTGTAAATGAACTCCTCGCATGTTTTTGTAGCAGAGTTGTAGTAATACCTTGGTATGGAAGCTAAGCACTTTCCTTTATCCATAATATCAAGGCAAATCACAGGGATTGTTTTAGGAGGTCTGCAATATTCCATACATTCCTGAAAGTTTTGAAAGTTGTTTTCATTGCCTTGGCAGCCACCATAAGTGAAAGGTTCACACAGCATGGAGGTCATATTGAAGAAATAACGCTTGAAGAGGCCTCGACAGAGCCCCTCTTTCTTCGGAAAACGACAGATCTGGGGGATTTTTGGTATCCTGAAGCATGATTTCTGACATTCCAAAAAGGACTTGAAGTTGTTCGCGTTTCCTCCACAACCGCTATAGCTGAATTCTTCACACTGTTGGGTGATTGTATTGTAGTAATAGCGATGGATGTCATCATTGCACGTTCCTTCTTCAACTTGCAACAGACAAACTTCTTTGGGTTGTACATAGAGTCCGACGGCGCTTTGCAGCAGAGCAACAATAAGCAGAAGACCTCCAAACAAATCACACGCCATTGTGACAGATTGTGGATTCGAAGATCTTGTGTAGTCTGATATACTTCTGTTATGTTACTCGCCTGAAATGTTACTAACTTGACTTGTCACAATCGTTGCCTTATAAATGGAGAATTTGTCAGAGGTGGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262153 True 1534 lncRNA 0.36 4 2613035 2615473

Neighbor

gene id symbol gene type direction distance location
CI01000054_02611877_02612240 GNGT1 coding downstream 641 2611672 ~ 2612394 (-)
CI01000054_02593560_02610677 NA coding downstream 2358 2593560 ~ 2610677 (-)
CI01000054_02529145_02537881 COL1A2 coding downstream 75154 2528905 ~ 2537881 (-)
CI01000054_02514735_02525669 CASD1 coding downstream 87366 2514659 ~ 2525669 (-)
CI01000054_02491166_02492438 NA coding downstream 120597 2491065 ~ 2492438 (-)
CI01000054_02709494_02814598 VPS50 coding upstream 94016 2709489 ~ 2814900 (-)
CI01000054_02825786_02828251 NA coding upstream 210280 2825753 ~ 2828251 (-)
CI01000054_02840361_02849268 NA coding upstream 224359 2839832 ~ 2849268 (-)
CI01000054_02857402_02860451 NA coding upstream 241929 2857402 ~ 2860573 (-)
CI01000054_02868603_02911589 CDK6 coding upstream 252971 2868444 ~ 2911805 (-)
G230977 NA non-coding downstream 29215 2583331 ~ 2583820 (-)
G230965 NA non-coding downstream 59092 2553484 ~ 2553943 (-)
G230964 NA non-coding downstream 61392 2551427 ~ 2551643 (-)
G230963 NA non-coding downstream 62691 2549977 ~ 2550344 (-)
G230962 NA non-coding downstream 65126 2547694 ~ 2547909 (-)
G230997 NA non-coding upstream 78736 2694209 ~ 2694438 (-)
G230999 NA non-coding upstream 80151 2695624 ~ 2695960 (-)
G230913 NA non-coding upstream 247927 2863400 ~ 2866640 (-)
G231001 NA non-coding upstream 301762 2917235 ~ 2917797 (-)
G230922 NA non-coding upstream 302554 2918027 ~ 2979454 (-)
G230178 NA other downstream 1382900 1185533 ~ 1230135 (-)
G230923 NA other upstream 221764 2837237 ~ 2837682 (-)
G230908 NA other upstream 442175 3057648 ~ 3063343 (-)
G231645 NA other upstream 1366374 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 2054678 4670151 ~ 4681361 (-)

Expression


Co-expression Network