G230836



Basic Information


Item Value
gene id G230836
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2804028 ~ 2806618 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU261988
GGCATATCAACGTAAATAATTAAGTAATAATAATAAAATAATTTTTTCGGACATTATTATTCCATATTCATTTTATAGAAAGAGTGTTTAAGGATTAACATTTTAGTGTAAAAATATTAGTAATTCTCACCTTGTGCACAGTTTTGATAAGGTCGCATAAGGGCTAGTCACAAAAGTTCAAAGCTTACACTTTATTTTGATAGTCCACTTTAGACGTTCTACTAACTATAAGTAACTTTGCAACTACATATCAACTAGCAGTCATGAGATGGGGGGGATAAGTCAACGTTTTTGCGTTCTATCGAAAATGTTTGCGTTCCCCCAAGAAACTTTGCATTTGCTCACAAAAGGTTTGCTTCCCCCAAGAAACTTTGCATTCACTCGCAAAATGTTTGTGTTCCCCTGAAAAACTTTGCATTCGATCACAAAATGTTTGCGGTTCCCCGAGAAACTTTGCGTTTGATCGCAAAATGTTTGCGTTCCCCTGACAAACTTTGCGTTCACTCACAAAACGTATGTGTTCCCCCGAGAAACTTTCCGTTCGCTCGCAAAATGTTTGCGTTCCCCCGAGAAACTTTGCATTCCCTCGCAAAACGTATTTGCAAGGGAACGCAAAGGTTTTGAGAGTGAATGCAAAATTTCTCCGGAAAATGCAAAAGCATTGAAATATTAGCAGATATTAAGCAGACAGTCTACTAACACTCTAATGAGAGTGAGTTGGCATGTAGTTGCAAAGTTACTTATAGAATGTCTACAGTGGACCATCAAAATAAAGTGTTAGCAGTTCAAATTTTCAGTTCAAACCAGTACTACTCTCCACTAAAAATAAATGACTTCTGACTTCTATTGTTTAGTTTTAGGCTTAAGGATTTTTTTCTGCTTGTCCATTTAAGCCAGTATTTCAGATTTGTGCTTATTGCTCACAGAAGTGCTTTGATGGCTGTAAAACCAGTGAAAATACTAAAGCTAAAACAAAAATTAGAGAAAAAAAAAAAAAAATCAGACCTATCTGATCCCATTAGCGTCTAAAGGAGCCAGTGCTTTTGGCAGCAATGCCAGCTGAGACTTAAAGCAACATGATACTAGCAGCAACTTTGCCGGTGGCCACGCATAATCATGATCTGACAATTAAGAACAACTGCATTTCATTCCACAAGCTAACTCAGCTTGACATGAGGGATTGCCCGGCCCCTGTGGGCCAGTGTTGTTGAAAGATTAGACAGAATGCATAAAACTTTAATTAAACTACCTCTTCCTTTTCCTTATCCTTCCCCTTTTCCTCTTTTTCCTTCTCTTTGAAGGCACTGAATGCAAATTGTTCCAATAAACTCTCTCATTTTGCCATAATGCATGATTCGCGTGCAAAAGCAGGAGGTTACTTAATATGCAATGTTGTTTGTGTCATGCCAAAAAAAACAGCAGGAGAGGATGTGACCTTTTCATAAAGAAGCTTATTCCTTCAGACAAATACTTTTGAGTGCTAGTGTTCTGGACGAGTTCTTGCAAAGGATGATGCCTCGTGTGCCTCGATCTATCACAGTGGGCTCTGACTCAACGTGGTTCTCCCTTTTCCTTCGGGGCCCTCAGAGGAAACCCAGCATCACGTCGAGCTGATCAATTACTTCCGACTCGCAGTTCGTCACCACCTCTCTGAGCCTCGCCGTTTCCTTCAGGGAGGCCACACGAAATCACATTTTAATGAGCTTTCACGACAGGATCCGTCGCACAATAAAAACATTTCCATTCAAACAGTCTCATATCATTATCATTCCATTAGGCAAGAAAGAGCAGAGAGGACAGACCAAGAGACTTATTTTTCTATTTCGTTTTCGGAACATGAATCCTGTGCTAATAGCAAAGGGGCAATGATGGTAGATGTGATTAAATTAAAGGATGTTGCTGGATTTGTGGACAGTGTTTGTACAACTTGAGTGTGCTGGGCTGTAAAACCACACCGTTGGGCACTTTTGTGGCTTACGCCTCTTTGCAATTAAATCCGCTTTCTTGCACCTGAGTGAGCAGACAACTGAAGTATCCATTACTGGCAGAATAAGCGCTGATATACAGTCCATAACTAGCTGCAGGAAAAGAAAGCAATTATTTAAAGAAGTCTCAAAAAATCCAAAACAGATTTAACAGTTTGCAAACTGGTTTTTGAGATGAAGCAACGTGAATCACAATTTCGTCATGTTGCACAGTTCATGCCAAGAAAGCAACTGACGGACATCTGCTTTGATTTTATAGATGTCATTTCACGAGAAACCAAATTTCCTTTGATCTTTTGAGATGAGATTTTGAAATAGTAGGAAAACATTCTGTAACTATCAAAAAGTAAAACTTTCCATCCAAAAAGATCATCTATTTCTGAACTTCTGCATTTGTCTAGAATTTGACAGATGAATGCAATATATGACTGTCCACTTTAAACATCAATTGGACCAACACAAATTGGCCCACCTGACTAAATAAGGAGAAAACTTTCAATCCTAAACACCAGAAGAACTAATGATAATGGTTGTTTTTATGTGAAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU261988 True 2531 lncRNA 0.39 2 2804028 2806618

Neighbor


gene id symbol gene type direction distance location
CI01000054_02652696_02685815 CALCR coding upstream 118195 2652696 ~ 2685833 (+)
CI01000054_02613166_02614884 TFPI2 coding upstream 188570 2613058 ~ 2615458 (+)
CI01000054_02589793_02592201 BET1 coding upstream 211102 2589793 ~ 2592926 (+)
CI01000054_02564258_02570248 NA coding upstream 233623 2563692 ~ 2570405 (+)
CI01000054_02500503_02511195 SGCE coding upstream 292833 2500503 ~ 2511195 (+)
CI01000054_02824071_02824355 NA coding downstream 17407 2824025 ~ 2824642 (+)
CI01000054_02951289_02967370 NA coding downstream 144297 2950915 ~ 2967660 (+)
CI01000054_02975008_02985278 EFCAB1 coding downstream 167970 2974588 ~ 2985335 (+)
CI01000054_03016199_03016501 NA coding downstream 209341 3015959 ~ 3016693 (+)
CI01000054_03424472_03425704 NA coding downstream 616436 3423054 ~ 3426433 (+)
G230828 NA non-coding upstream 20271 2782936 ~ 2783757 (+)
G230817 NA non-coding upstream 106268 2697490 ~ 2697760 (+)
G230816 NA non-coding upstream 107003 2696513 ~ 2697025 (+)
G230707 NA non-coding upstream 114813 2633291 ~ 2689215 (+)
G230812 NA non-coding upstream 191650 2611396 ~ 2612378 (+)
G230831 NA non-coding downstream 30539 2837157 ~ 2837639 (+)
G230702 NA non-coding downstream 31479 2838097 ~ 2843148 (+)
G230838 NA non-coding downstream 43196 2849814 ~ 2850084 (+)
G230839 NA non-coding downstream 43837 2850455 ~ 2851982 (+)
G230693 NA non-coding downstream 57979 2864597 ~ 2866640 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 499646 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 1077235 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 1142463 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 1221959 1578022 ~ 1579356 (+)
G229936 NA other upstream 1396898 1397080 ~ 1407130 (+)
G230689 NA other downstream 271884 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1101833 3848427 ~ 3914231 (+)
G231863 NA other downstream 1600534 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 2816397 5608457 ~ 5634804 (+)
G232558 NA other downstream 3187042 5993660 ~ 6041863 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G156341 NA non-coding NC_056721.1 CM032090.1 10348141 ~ 10351881 (-)