G230831


Basic Information

Item Value
gene id G230831
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2837157 ~ 2837639 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261983
AGATGCAACAAGTTTTTCACACCCGGATTTGGGGATCCTCTGCCATTCCTCTTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCCTCGTTATTTTAGCTGTGTGCTTAGGGTCATTGTCTTGTTGGAAGGTAAACCTTCGGCCCAGTCTGAGGTCCTGAGCACTCTGGAGAAGGTTTTTGTCCAGGATATCCCTGTACTTGGCCGCATTCATCTTTCCCTCGATTGCAACCAGTCGTCCTGTCCCTGCAGCTGAAAAACACCCCCACAGCATGATGCTGCCACCACCATGCTTCACTGTTGGGACTGTATTGGACAGGTGATGAGCAGTGCCTGGTTTTCTCCACACATACCGCTTAGAATTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU261983 True 483 lncRNA 0.50 1 2837157 2837639

Neighbor

gene id symbol gene type direction distance location
CI01000054_02824071_02824355 NA coding upstream 12515 2824025 ~ 2824642 (+)
CI01000054_02652696_02685815 CALCR coding upstream 151324 2652696 ~ 2685833 (+)
CI01000054_02613166_02614884 TFPI2 coding upstream 221699 2613058 ~ 2615458 (+)
CI01000054_02589793_02592201 BET1 coding upstream 244231 2589793 ~ 2592926 (+)
CI01000054_02564258_02570248 NA coding upstream 266752 2563692 ~ 2570405 (+)
CI01000054_02951289_02967370 NA coding downstream 113276 2950915 ~ 2967660 (+)
CI01000054_02975008_02985278 EFCAB1 coding downstream 136949 2974588 ~ 2985335 (+)
CI01000054_03016199_03016501 NA coding downstream 178320 3015959 ~ 3016693 (+)
CI01000054_03424472_03425704 NA coding downstream 585415 3423054 ~ 3426433 (+)
CI01000054_03558982_03663042 ADGRB2 coding downstream 721343 3558982 ~ 3663042 (+)
G230836 NA non-coding upstream 30539 2804028 ~ 2806618 (+)
G230828 NA non-coding upstream 53400 2782936 ~ 2783757 (+)
G230817 NA non-coding upstream 139397 2697490 ~ 2697760 (+)
G230816 NA non-coding upstream 140132 2696513 ~ 2697025 (+)
G230707 NA non-coding upstream 147942 2633291 ~ 2689215 (+)
G230702 NA non-coding downstream 458 2838097 ~ 2843148 (+)
G230838 NA non-coding downstream 12175 2849814 ~ 2850084 (+)
G230839 NA non-coding downstream 12816 2850455 ~ 2851982 (+)
G230693 NA non-coding downstream 26958 2864597 ~ 2866640 (+)
G230695 NA non-coding downstream 73317 2910956 ~ 2913576 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 532775 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 1110364 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 1175592 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 1255088 1578022 ~ 1579356 (+)
G229936 NA other upstream 1430027 1397080 ~ 1407130 (+)
G230689 NA other downstream 240863 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1070812 3848427 ~ 3914231 (+)
G231863 NA other downstream 1569513 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 2785376 5608457 ~ 5634804 (+)
G232558 NA other downstream 3156021 5993660 ~ 6041863 (+)

Expression


Co-expression Network